Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47020 1625 / 0 unknown protein AT5G11700 1087 / 0 unknown protein AT4G32920 1044 / 0 glycine-rich protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086200 [exp] 2205 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.006G234500 [exp] 1100 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 1035 / 0 AT5G11700 1779 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007257 [exp] 1319 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10005497 [exp] 1056 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10007461 [exp] 1033 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10043045 [exp] 1024 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 578 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10007259 [exp] 244 / 1e-72 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 134 / 4e-36 AT5G47020 169 / 1e-49 unknown protein Lus10000229 [exp] 102 / 7e-25 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G148300.1 pacid=42790404 polypeptide=Potri.001G148300.1.p locus=Potri.001G148300 ID=Potri.001G148300.1.v4.1 annot-version=v4.1 ATGTGGGTGGTAATGTGTCCTTTCCTAATGCAATGGCAACTTTTTTGTTGCATTCTTTTAGGGTTTTTTTGTGCGTCCACCATTTCTTTTGCGCCAGGGC AGTATGAGGGTGGGGGCATTTGGTCAGGAAATGGGTTACATAGTTCTGGATCAGTTTCAAGCAATCACTCTAGAAGTGGCACCTCTAGCTATGTTAAAAC ATTAAAATTTTCTCTCCCATTAAACAGTTCCGTATCCTGCGAGGAACTAGAAGGAGTGGGATCGCTTAATACCACTTGCGTGGTGAACTCAAATTTGTAT TTGAATTCTGATCTTTATATTTATGGAACAGGAAACTTAGAAATAATTCCACATGTTTCAATTGTATGCCCAATAGAAGGATGCATGGTGACGGTTAATA TGACTGGAAATGTTAACATTGGTCAACATGCAGCAATCATTGCTGGTTCAGTTGTTTTTTCTGCTGCCAACTTGACCATGGATAGTCACTCTTCTATAAA TACAACAGCCTTGGGTGGATCACCGCCGCCTCAAACTAGTGGTACACCAGTTGGGGATGATGGAGGTGGTGGGGGTCACGGTGGGCGAGGTGCTTCCTGT TTGAAAAGGAATAAAACAAGTAATTGGGGTGGTGATGTTTATGCTTGGTCAACCTTGGCTGAGCCATGGAGCTATGGTAGTAAGGGTGGTGGCACATCGT CTCAGAATAAATGTGGAGGGAATGGTGGGGGGCGTGTCAAGCTTCAAGTGAAGGAAATATTATACTTGAATGGATCTGTCGCTGCAGAAGGTGGGGATGG GGGGCTGAATGGGGGAGGTGGGTCTGGTGGAAGCATATTTGTGCATGCTGTGAAGCTGAAGGGATATGGAACTATTAGTGCAGCAGGTGGAAGAGGATGG GGTGGAGGTGGCGGTGGAAGAGTTTCTTTGGATTGTTATAGCATACAGGAAGATGTGAAAGTTACTGTGCATGGTGGTTTGAGTATTGGCTGTCCTGGGA ATGCTGGAGCAGCTGGTACCTTCTTTAATGCAGATTTACTCAGTTTAAGAGTGAGCAATGACTATGTGATGACAGAAACAGAAACCCCTTTGCTTGATTT TCCTACTATGACCCTGTGGTCAAATGTTTTTGTGGAGAATTATGCAAAAGTTTTGGTTCCACTGGTTTGGAGCAGGGTTCAGGTTAGAGGTCAGATTAGT TTATATCGTGGAGGCAGCATTGTCTTTGGATTGTCTGAATTTCCAGTATCAGAATTTGAGCTTGTAGCAGAAGAACTTTTGATGAGCGATTCTATCATAA AGGTTTTTGGTGCATTTAGAGTTGCTATCAAAATGCTACTCATGTGGAATTCCAAAATTGAAATAGATGGAGGTGGAAATACTGTTGTTACTGCTTCTGT CCTTGAAGTCAGGAATCTGATTGTTCTAAGGGCAGGCTCTGTCCTCGGCTCAAATGCAAATTTGGGGTTATATGGTCAGGGACTACTAAAGTTGACAGGT CATGGTGATACAATTCGAGGCCAGCGACTTTCCCTGTCTCTTTTCTATAACATAACTGTTGGACCTGGTTCTTTACTTCAAGCTCCGTTGGATGATGATG CTAGCAGAAGTGTGGTTACAAAATCCCTTTGTGAGAGTCATACATGCCCAATAGATTTGATAACTCCCCCAGATGATTGCCATGTTAATTACACGCTGTC GTTTTCACTTCAAATTTGTCGTGTTGAAGGCCTCCTTGTAAATGGCATTATAAAGGGGAGTATTATCCACATCCACAGGGCAAGAACTATCATTATTGAT ACTGATGGCTTGATTACTGCATCGGAGTTAGGTTGCAATGATGGTATTGGAAAAGGGAACTATTCCAAAGGAGCTGGTAGTGGTGCTGGGCATGGGGGAA GAGGGGGCTCAGGTTGTTTTAACGGGATCGTGAGTAATGGCGGTAATAAATACGGTAATGCTGATCTTCCTTGTGAATTGGGAAGCGGAACCCAAGGTCC CAATCAGTCCTATGGAAATGTTATTGGAGGGGGAATGATTGTGATGGGCTCCATCCAGTGGCCACTGTTAAGGCTCAATCTTTATGGATCTTTGATGGTA GATGGTCAAAGCTTTGATAAAGCGTCAGTAAATAGTAATGCTTCTTTGATTGGTGGACTTGGTGGAGCTTCTGGAGGGACGGTTCTTCTTTTCCTGCAGG AGCTTATGCTTGCAGAAAAATCATCTCTATCTGTTCGCGGGGGCAATGGCAGCCCTCTTGGTGGCGGGGGAGGTGGGGGTGGAAGAGTTCATTTTCATTG GTATAAGATAGACACCGGGGATGAATATGTTCCAGTTGCAAGTATAAGTGGTTCAATTAACAACAGTGGAGGAGCTGGAGAAAATGGTGGTCTTTTTGGG GAGGAAGGCACCGTCACTGGGAAAAAGTGCCCAAAGGGCCTCTATGGTACATTTTGCAAGGAATGCCCTCTTGGTACTTTCAAAGATGTTGATGGCTCTG ATGAAAGTCTTTGCATTCCTTGCTCTCTTGATCTTCTTCCTAATCGTGCAAATTTCATACATGTACGAGGGGGGGTTAGTCAGCCATCTTGTCCCTATAA ATGCATATCTGACAAGTACAGGATGCCAAATTGCTACACTCCTCTTGAGGAGCTGGTGTATACATTTGGAGGCCCTTGGCCTTTTGCCCTCATCCTGTCT GTCCTTTTGGTGCTTCTAGCTCTATTGTTGAGTACAGCGAGAATCAAATTAGTAGGATCAGGTAAATGTTATGATGCAAGTTCAGTTGAGCACCAGAGTC ATCACCACTTTCCACATCTACTTTCCCTATCAGAGGTGCGAGGAACTAGAGCTGAAGAAAGTCAGAGCCATGTCTATAGAATGTACTTTATGGGCCCCAA TACTTTTAGGGAACCCTGGCATCTTCCATACTTTCTCCCCAATGCAATTATTGAGATTGTGTATGAAGATGCTTTTAACAGGTTTATTGATGATATAAAT TCTGTTGCCGCATATGATTGGTGGGAAGGGTCGGTCCACAGCATACTTTCCGTGCTTGCCTATCCTTGCGCATGGTCCTGGAAACAGTGGCGGCAGAGAA ATAAAATTCATCGACTTCAGGAATATGTTAAGTCTGAATATGACCACTTGTGTCTTCGCTCTTGTCGATCTCGAGCCCTGTACAAGGGGATGAAGGTTGG AGCGACACCAGACTTAATGGTTGCTTACATTGACTTTTTCCTTGGTGGTGACGAGAAGCGTTTAGATATAGTGTCTATAATACAAAAGAGATTTCCCATG TGCATAATATTTGGAGGTGATGGGAGCTATATGTCACCTTATAATCTACATAGTGACACATTATTGACCAATCTTCTTGGTCAGCATGTCCCAGCAACCG TCTGGAATCATTTGGTGGCTGGTTTAAATGCCCAATTGAGGATTGTGAGGCATGGATCTATCCGCTCTGCTCTACTTCCTGTCATTGATTGGATATGCAG TCATGGAAACCCCCAGCTTGAGTTCCATGGAGTTAAGATGGAGCTGGGATGGTTCCAAGCAACTGCTTCTGGTTACTATCAGTTAGGTGTCTTAGTAATG GTTGGTGATTATTCTCTCCATTCTATTCACCAGTCTGACTGGGTAGATAAAGGCAATGGTGAACCAACAAGGAACAGTGCCTCATGTGCAAGCAGAAGTC TTAAGCAGCTGCAGCAAGAGCGGCCATACTTGAGTCAATCTTTATCTCGCAAAAGGATGACTGGGGGAATTAATGGAGGTCTTCTGAATGAAGCTACCTT GAAATCTCTGGATTTTAAAAGGGACTTTCTCTCTCCGCTCTCTCTCTTATTGCATAACACTAGGCCTGTTGGCCGTCAGGATGCTCTTCAGCTTTTCATT ACTATCATGCTTTTGGCAGATCTTTCTGTCACACTTCTCACATTGCTTCAGTTCTATTGGATCTCTCTTGGTGCTTTCCTTGCTGTTCTGCTTGTTCTTC CTCTATCCTTGCTTTCTCCATTCCCTGCAGGCTTGAATGCCTTATTCAGCAGAGAACCTAGAAGAGCCTCACATGCTCGTGTATATGCATTATGGAATGC AACCTCCCTGTCTAACATTGCTGTAGCTTTCACTTGTGGTATTTTTCATTATGGATTTTCTTCTCTCCGACCACCTGATGAGGAAAACACATGGAACATT AGAAGGGAGGACAATAAATGGTGGCTGTTGTCAACTATCCTTCTGCTGTTCAAGTCAGTACAAGCTCGTTTAGTAGATTGGCACATTGCTAATCTAGAAA TCCAAGACATTTCTTTGTTCTGCCCAGATCCAGATGCCTTTTGGGCTCACGAATCTAGTTCATGA
AA sequence Show only first row Show all	>Potri.001G148300.1 pacid=42790404 polypeptide=Potri.001G148300.1.p locus=Potri.001G148300 ID=Potri.001G148300.1.v4.1 annot-version=v4.1 MWVVMCPFLMQWQLFCCILLGFFCASTISFAPGQYEGGGIWSGNGLHSSGSVSSNHSRSGTSSYVKTLKFSLPLNSSVSCEELEGVGSLNTTCVVNSNLY LNSDLYIYGTGNLEIIPHVSIVCPIEGCMVTVNMTGNVNIGQHAAIIAGSVVFSAANLTMDSHSSINTTALGGSPPPQTSGTPVGDDGGGGGHGGRGASC LKRNKTSNWGGDVYAWSTLAEPWSYGSKGGGTSSQNKCGGNGGGRVKLQVKEILYLNGSVAAEGGDGGLNGGGGSGGSIFVHAVKLKGYGTISAAGGRGW GGGGGGRVSLDCYSIQEDVKVTVHGGLSIGCPGNAGAAGTFFNADLLSLRVSNDYVMTETETPLLDFPTMTLWSNVFVENYAKVLVPLVWSRVQVRGQIS LYRGGSIVFGLSEFPVSEFELVAEELLMSDSIIKVFGAFRVAIKMLLMWNSKIEIDGGGNTVVTASVLEVRNLIVLRAGSVLGSNANLGLYGQGLLKLTG HGDTIRGQRLSLSLFYNITVGPGSLLQAPLDDDASRSVVTKSLCESHTCPIDLITPPDDCHVNYTLSFSLQICRVEGLLVNGIIKGSIIHIHRARTIIID TDGLITASELGCNDGIGKGNYSKGAGSGAGHGGRGGSGCFNGIVSNGGNKYGNADLPCELGSGTQGPNQSYGNVIGGGMIVMGSIQWPLLRLNLYGSLMV DGQSFDKASVNSNASLIGGLGGASGGTVLLFLQELMLAEKSSLSVRGGNGSPLGGGGGGGGRVHFHWYKIDTGDEYVPVASISGSINNSGGAGENGGLFG EEGTVTGKKCPKGLYGTFCKECPLGTFKDVDGSDESLCIPCSLDLLPNRANFIHVRGGVSQPSCPYKCISDKYRMPNCYTPLEELVYTFGGPWPFALILS VLLVLLALLLSTARIKLVGSGKCYDASSVEHQSHHHFPHLLSLSEVRGTRAEESQSHVYRMYFMGPNTFREPWHLPYFLPNAIIEIVYEDAFNRFIDDIN SVAAYDWWEGSVHSILSVLAYPCAWSWKQWRQRNKIHRLQEYVKSEYDHLCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPM CIIFGGDGSYMSPYNLHSDTLLTNLLGQHVPATVWNHLVAGLNAQLRIVRHGSIRSALLPVIDWICSHGNPQLEFHGVKMELGWFQATASGYYQLGVLVM VGDYSLHSIHQSDWVDKGNGEPTRNSASCASRSLKQLQQERPYLSQSLSRKRMTGGINGGLLNEATLKSLDFKRDFLSPLSLLLHNTRPVGRQDALQLFI TIMLLADLSVTLLTLLQFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSREPRRASHARVYALWNATSLSNIAVAFTCGIFHYGFSSLRPPDEENTWNI RREDNKWWLLSTILLLFKSVQARLVDWHIANLEIQDISLFCPDPDAFWAHESSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47020			unknown protein		Potri.001G148300 [exp]	0	1
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	5.19	0.8446
AT5G61450			P-loop containing nucleoside t...		Potri.001G125700 [exp]	7.07	0.8089
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106632 [exp]	8.66	0.8129
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	11.48	0.8101
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.016G000100 [exp]	12.36	0.7514
AT5G47020			unknown protein		Potri.003G086200 [exp]	13.78	0.7833
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	14.28	0.7858
AT4G27220			NB-ARC domain-containing disea...		Potri.001G429660 [exp]	15.71	0.7891
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	16.73	0.7954
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.003G088900 [exp]	18.97	0.7909

Compare expression of checked genes

Potri.001G148300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.