Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32730 316 / 1e-106 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085901 [exp] 645 / 0 AT1G32730 325 / 3e-110 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001085 [exp] 329 / 2e-111 AT1G32730 253 / 1e-82 unknown protein Lus10040132 [exp] 326 / 3e-110 AT1G32730 243 / 2e-78 unknown protein Lus10011037 [exp] 194 / 2e-59 AT1G32730 132 / 2e-36 unknown protein Lus10000258 [exp] 193 / 2e-59 AT1G32730 140 / 6e-40 unknown protein Lus10003008 [exp] 94 / 7e-24 AT1G32730 86 / 1e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [poplar] [flax] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Potri.001G148500.1 pacid=42789196 polypeptide=Potri.001G148500.1.p locus=Potri.001G148500 ID=Potri.001G148500.1.v4.1 annot-version=v4.1 ATGGCAGCCTCTTCTCCAGTCATTAGCAATAACAGCTCCGACATCGGCCAAACCGCCATCTCCGCCGCCGCCGCAGCGTCTTTCAGCGTGCCACCGAAGA CTCTCCGCGGCCTCAACAAACCTAAGTGTATTCAGTGCGGCAACGTTGCCCGCTCCAGGTGCCCTTATCAGTCGTGCAAAAGTTGCTGCTCAAGAGCTCA AAATCCATGCCATATTCACGTTCTTAAAGCAAATGCAACATTTCCGGACAAGACTCCAGCTTCAAGTGCTCCTCTCTTTGAGCAGCAGCCGAATGAAGCA CCTCCTGCAGTGAGTTCTCATAGAACCGCATCACTTAGGCAACTTTCTAGCAATTTTTCCCAATTCAACAATTTACATTCCCCACTCCGTTCAAGGAAAT CATTGACCAGAAAGGAAGCTGCGGCTATAAATGAATGGAGGTTTTCCAAATTGAAGGAATTCAAGGATAGAAATATTGAAGTGGAAAATGAAGCTTTTGA TCGGTACATGCATAATATTAGCCTACTGGAAGAGGTATTCTCTTTGAAATCTTTCCTAGAAGGCTCCACTGAGGATGGATCACTCTCTTCAAACCACGAC CATGCATCTGCAGAGGATGATGACACAGAGGAAAAGATGGTTTCAGAGCAGAAGTTGAAGCTTCGGTCAAATCCTAGAAGGAGTGAGAATGTCCGTAAGA GGCTACAACAACTTGTTGATGGAGGATTGAAGAAGCTTCAGAAACTCGAGTTGAATAATGGCAGTGTTAATAACCAAAATGAACTTGATAAAAGGCCGGA GAAGGCAAAAGGTTTGAGGGCGGAGAGGGCTTCAGCTTTAAGTGATCTTATTGACAAGCTCAACAAGGCCCGCAACGAAGAAGATCTGAATTCTTGCATG GAGATAAAGGCCCAACTTTCTAGTCAGCACACTCGGTCTAGAACAGAAACCAAAGATGTTGAGGTATCGAAGGAGCAAATTGCCAAAAATGACTTGGCAC CACCACAAAAAGAATTAGATTATTTTTCGCAAAAATTATTTAGAACAGTGGAAATTGACCATCAAGCTCTGACAAGTATAGATGCACACTTCTCTTCCCT AGAAAAGATAGAAGATTTGTGA
AA sequence Show only first row Show all	>Potri.001G148500.1 pacid=42789196 polypeptide=Potri.001G148500.1.p locus=Potri.001G148500 ID=Potri.001G148500.1.v4.1 annot-version=v4.1 MAASSPVISNNSSDIGQTAISAAAAASFSVPPKTLRGLNKPKCIQCGNVARSRCPYQSCKSCCSRAQNPCHIHVLKANATFPDKTPASSAPLFEQQPNEA PPAVSSHRTASLRQLSSNFSQFNNLHSPLRSRKSLTRKEAAAINEWRFSKLKEFKDRNIEVENEAFDRYMHNISLLEEVFSLKSFLEGSTEDGSLSSNHD HASAEDDDTEEKMVSEQKLKLRSNPRRSENVRKRLQQLVDGGLKKLQKLELNNGSVNNQNELDKRPEKAKGLRAERASALSDLIDKLNKARNEEDLNSCM EIKAQLSSQHTRSRTETKDVEVSKEQIAKNDLAPPQKELDYFSQKLFRTVEIDHQALTSIDAHFSSLEKIEDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32730			unknown protein		Potri.001G148500 [exp]	0	1
AT3G53580			diaminopimelate epimerase fami...		Potri.016G120900 [exp]	1.73	0.9043
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	3.16	0.8896
AT3G09250			Nuclear transport factor 2 (NT...		Potri.006G093700 [exp]	3.46	0.8703
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232600 [exp]	8.48	0.8624
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	10.00	0.8547
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.018G000800 [exp]	12.00	0.8674
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	12.68	0.8685
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	15.29	0.8592
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Potri.014G176900 [exp]	16.12	0.8533
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	16.27	0.8759

Compare expression of checked genes

Potri.001G148500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.