Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17670 142 / 5e-44 Protein of unknown function (DUF581) (.1) AT5G47060 136 / 2e-41 Protein of unknown function (DUF581) (.1) AT2G44670 91 / 2e-24 Protein of unknown function (DUF581) (.1) AT1G22160 66 / 5e-14 Protein of unknown function (DUF581) (.1) AT1G78020 66 / 8e-14 Protein of unknown function (DUF581) (.1) AT5G65040 62 / 6e-13 Protein of unknown function (DUF581) (.1) AT5G49120 62 / 8e-13 Protein of unknown function (DUF581) (.1) AT4G39795 58 / 3e-11 Protein of unknown function (DUF581) (.1) AT1G53885 57 / 4e-11 Protein of unknown function (DUF581) (.1) AT1G53903 57 / 4e-11 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085700 [exp] 289 / 6e-102 AT4G17670 140 / 2e-43 Protein of unknown function (DUF581) (.1) Potri.014G052900 [exp] 94 / 9e-26 AT2G44670 88 / 2e-24 Protein of unknown function (DUF581) (.1) Potri.002G140300 [exp] 90 / 4e-24 AT2G44670 85 / 3e-23 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 74 / 4e-17 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 70 / 1e-15 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.007G089200 [exp] 68 / 1e-14 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 65 / 2e-13 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.003G071900 [exp] 59 / 2e-11 AT1G53903 108 / 4e-31 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 57 / 7e-11 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019494 [exp] 93 / 5e-25 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 64 / 2e-13 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 63 / 8e-13 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10043343 [exp] 57 / 2e-11 AT5G47060 61 / 4e-13 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 55 / 2e-09 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 54 / 2e-09 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 54 / 6e-09 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10022073 [exp] 51 / 1e-08 AT3G63210 59 / 5e-11 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 52 / 2e-08 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10003939 [exp] 51 / 2e-08 AT1G53903 60 / 1e-11 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.001G148700.4 pacid=42793352 polypeptide=Potri.001G148700.4.p locus=Potri.001G148700 ID=Potri.001G148700.4.v4.1 annot-version=v4.1 ATGGAGTTCTCATCTTCAAGAAGGCCTTGTTTCATAGATGAAGATGATGGGTTAGCTTCTCTTGCAGATATGGAAGCTGGGTCTTCAGGGAATCATCACC CATTCTTCTCTAGGTCACTCTGTTATGCGAGAAGAGGTAGTTTTAGAAACCTTTCATCTCTGGTGTCTTCTCCAAGATCGGCAAGGTATTGTGACTCTAG ATATGAAGATCACCAACCTCATTTCTTGGAAGCTTGTTTTCTTTGCAAGAAATCACTCGGTGATAACAGAGACATCTTCATGTACAGAGGGGACACGCCA TTCTGCAGTGAAGAGTGCAGACAAGAGCAAATAGATATAGACGAAGCCAATGAAAAGAACTGGAATCTCTCTTCATCTATGAAAGCATTAAGGAAAAAAG ACCAGAAGAAATCCACATCTCCTACTAAAGCTCAGGACTACCCTTCTCGTACAGGCACCGTTGCCGCAGCATAA
AA sequence Show only first row Show all	>Potri.001G148700.4 pacid=42793352 polypeptide=Potri.001G148700.4.p locus=Potri.001G148700 ID=Potri.001G148700.4.v4.1 annot-version=v4.1 MEFSSSRRPCFIDEDDGLASLADMEAGSSGNHHPFFSRSLCYARRGSFRNLSSLVSSPRSARYCDSRYEDHQPHFLEACFLCKKSLGDNRDIFMYRGDTP FCSEECRQEQIDIDEANEKNWNLSSSMKALRKKDQKKSTSPTKAQDYPSRTGTVAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17670			Protein of unknown function (D...		Potri.001G148700 [exp]	0	1
AT5G64500			Major facilitator superfamily ...		Potri.001G286600 [exp]	10.39	0.7067
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	13.26	0.8059
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	17.83	0.7071
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.004G207100 [exp]	18.57	0.7464
AT1G74110		CYP78A10	"cytochrome P450, family 78, s...		Potri.001G054800 [exp]	19.18	0.7882
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Potri.014G149700 [exp]	27.16	0.7631
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.011G142800 [exp]	34.94	0.7603	Pt-TPS1.6
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.005G249200 [exp]	35.00	0.7835	Pt-FTSH2.1
					Potri.008G159600 [exp]	36.66	0.7596
AT1G43760			DNAse I-like superfamily prote...		Potri.003G186650 [exp]	55.64	0.7250

Compare expression of checked genes

Potri.001G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.