Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17140 3708 / 0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) AT1G48090 1293 / 0 calcium-dependent lipid-binding family protein (.1) AT5G24740 132 / 2e-32 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2) AT3G04350 51 / 2e-05 Plant protein of unknown function (DUF946) (.1) AT5G18490 50 / 5e-05 Plant protein of unknown function (DUF946) (.1) AT2G44260 47 / 0.0005 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100600 [exp] 1853 / 0 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1) Potri.001G455600 [exp] 121 / 1e-26 AT5G24740 3006 / 0.0 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2) Potri.001G232500 [exp] 52 / 9e-06 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 51 / 1e-05 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.013G048300 [exp] 49 / 9e-05 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003007 [exp] 5938 / 0 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10011036 [exp] 5924 / 0 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10017107 [exp] 1602 / 0 AT1G48090 3351 / 0.0 calcium-dependent lipid-binding family protein (.1) Lus10037833 [exp] 870 / 0 AT1G48090 2202 / 0.0 calcium-dependent lipid-binding family protein (.1) Lus10017108 [exp] 119 / 2e-30 AT1G48090 206 / 2e-62 calcium-dependent lipid-binding family protein (.1) Lus10003835 [exp] 115 / 1e-24 AT5G24740 1701 / 0.0 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2) Lus10039773 [exp] 64 / 1e-11 AT4G17140 68 / 2e-14 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10006816 [exp] 57 / 7e-08 AT4G17140 59 / 8e-10 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10017580 [exp] 52 / 9e-06 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 52 / 1e-05 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [poplar] [flax] Vps62 Vacuolar protein sorting-associated protein 62 PF06650 [poplar] [flax] SHR-BD SHR-binding domain of vacuolar-sorting associated protein 13 PF12624 [poplar] [flax] Chorein_N N-terminal region of Chorein or VPS13 PF16908 [poplar] [flax] VPS13 Vacuolar sorting-associated protein 13, N-terminal PF16910 [poplar] [flax] VPS13_mid_rpt Repeating coiled region of VPS13
Representative CDS sequence Show only first row Show all	>Potri.001G148800.1 pacid=42791440 polypeptide=Potri.001G148800.1.p locus=Potri.001G148800 ID=Potri.001G148800.1.v4.1 annot-version=v4.1 ATGTTGGAGGATCAAGTGGCGTCTTTGTTACAGAGGTTACTAGGAAATTATGTGAGAGGATTCAACAAAGAAGCTCTCAAGATCAGCGTTTGGAAAGGCG ATGTAGAGCTAACGAATATGCAACTGAAGCCTGAGGCACTCAATGCGTTGAAGTTGCCTGTGAAGGTTAAGGCTGGATTTCTTGGATCAGTCAAACTCAA GGTTCCATGGAGCAGGCTAGGCCAAGATCCGGTTTTAGTTTACTTGGATCGCATATTTTTATTGGCTGAACCTGCAACTCAAGTTGACGGGCTTACTGAG GATGTGGTTCAAGAAGCAAAGAAAAGCCGAGTTCGGGAAATGGAAATGAAGCTTTTGGAGAAGGCGCAACAGTTGACGTCAGAAATGAATACTTCATGGC TTGGATCTCTGATCAACACGATAATTGGGAACCTGAAGCTTTCAATTTCAAATATCCATATAAGATATGAGGATCTTGAGAGCAATCCCGAGCACCCATT TGCAGCTGGGGTAACCTTGGGCAAACTCTCTGCTGTGACAGTTGATGATAATGGGATGGAAACCTTTGTTTCTGGGGGTGCACTAGACCGTATTCAGAAG TCTGTTGAACTTGATCAACTTGCAATTTATCTGGATTCTGATATATCACCATGGAATATTGACAAGTCATGGGAGGACTTGCTACCTTCAGAGTGGCTTC AGGTTTTTAGGTTTGGTACAAAGGATGGAAAACCAGCAGATCATATGATGGTAAAGCACTCGTACATTCTGCAACCTGTGACGGGGGATGCAACTTACTC AAAGCTGCGGCGAAAAGAATCTGCTAATAGTGACCAACCTTTACAGAAGGCTGTGGTGAACTTGAATGATGTGACATTGAGTTTGTCAAAGGACGGTTAC AGAGATATTTTAAAATTAGCTGATAATTTTGCAGCCTTTAACCAACGCTTAAAATTTGCTCATTATCGTCCACTTTTGCCAGTGAAATCTAATCCAAGGT CCTGGTGGAGATATGCTTACAAAGCTGTTTCTGACCAGACGAAGAAAGCAAGTGGGAAATTATCCTGGGAGCAAGTACTGAGATATGCAGGCTTACGCAA GAGATACATCTCTCTATACGCTTCTCTGCTTAAATCTGATCCCAGTCATGAAATTGTTGATGACAACGAAGAAATCGAGGAACTTGATCGTGAACTTGAT ATTGAACTCATTTTGCAGTGGAGGATGTTGGCTCACAAATATGTGAAGCAGTCGATGGAGTCAGATCGTTACTCAAGGAAACAGAAACCCAAGACATCAT GGTGGTCATTTGGATGGAACAATAAATCTGACAAAGATGAGAGTGAACAATTTCATTTCAGCGAGGAGGACTGGGAACAATTAAACAAATTGATAGGTTA CAGGGAAGGCGAAAATGAGCAGTCTGTGATAATTAATGAGAAGGCAGATACTCTTAATATGTCTTTGGAAGTGCACATGAAACATAATGCTTCAAAGCTT GTTGATGGGGCCCGGGAATATATTGCTGAATTATCATGTGAGGATCTTGATTGCTCCATAAAGCTTTATCCAGAGACAAAAGTTTTTGACTTGAAATTGG GGTCATATCAATTATCATCGCCAAATGGTCTCCTTGCTGAGAGTGCAACTGCTTCTGGTTCTCTAGTTGGTGTCTTCTACTACAAGCCTTTTGATGCCAA GGTGGATTGGAGCATGGCTGTGAAAGCTGCTCCATGCTACATGACTTATCTGAAGGATTCCATTGATGGGATTATCAATTTTTTTGAAAGTAGTAATGCT GTCAGTCAGACTATTGCATTAGAAACAGCAGCTGCTGTGCAGATGACATTTGATGGGGTTAAGCGCAGTGCTCAACAGCAAGTGAACAGGGCGTTGAAGG ATCATGCGAGGTTTCTGTTGGACCTGGATATTGCTGCTCCAAAGATTACAATTCCTACTGAGTTTTACCCCGACAACATCCATTCAACAAAACTTTTGCT AGACTTGGGAAATTTGGTCATTCGCTCAGAGGATGACTATGAAAGGAGATTATCCGAGGACCAGAATATGTATTTGCAATTTGATTTGGTTTTAAGTGAT GTTTGTGCTTTTTTGGTTGATGGTGACTACCGCTGGAGCCAAACAGCATCACAAGGTTCTGCTAGTTCTGTCCGCTCAGAAGGTGTTAGTTTCTTGCCTG TTATTGATAGGTGCGGGGTAATCTTAACATTCCAACAGATTCGATTAGAGAACCCATCATATCCTTCTACAAGACTTTCTGTACGGGTGCCATCATTAGG GTTTCACTTTTCTCCTGCTCGGTATCATCGATTGATGCGAGTGGCAAAGATCTTTCAGGAGGAAGGTAGTGAGAATTCTGATCTTCTTCGTCCTTGGAAT CAATCAGACTTTGAGGGGTGGTTGTCTCTTCTTATTCGAAAGGGCATGGGAAATAGGGAAGCTGTATGGCAGCGGCGATATATTTGCTTAGTTGGTCCTT TTCTGTATGTACTAGAAAACCTGGACTCAAAATCTTACAAGCACTATCTCAGCTTACGAGGAAAACAGGTATATCATCTTCCAGCAGAGTTGCTTGGTGG TGTGGAGCATGTCTTGACTATTTGTGATGCTGCACGCCCCCTGAGCAAGGTTGTGGAAGATGCGAATGCACTGATATTACTATGTGATTCTGATGATTCA CAGAGAAATTGGCAAAGTCGCTTGCAGGGGGCTATATATTCTGCTTCAGGTTCTGCACCTATTACTACTCTTTCTGAAACTTCGTCAGATCCAGAGGACT CAGAAACTGAACTTAATGACAGTGGTGAAGCAAGTAATATATTGAAGATGGAGCGTATATTTATAACAGGTGCTCTTGATGAGCTAAAGATCTGCTTCAA TTACAATCGTCAGCGTGACCTGAGTTTTGTTAATGTGCTTCTTGCTGAAGAGAATCACTTGTTTGAATTTCGAGCAATAGGTGGCCAGGTTGAACTTTCA ATTAGAGAGAATGATATGTTCATTGGCACTGTTCTTAAATCTTTAGAGATTGAAGATTTAGTTTGCTGTAATGGTGTTTCTCAGCCTTGTTTCCTTGCAA GATCATTTGTTCAAAGTTCAGATGTGCACTTATCCTTTGATGATACTGGGAACCAGACTTTTGACAACAATAATTCAACTCCAAGTGAAGGAGAAGACAA GTTCTACGAGGCACCAGAAAATTTGGTCAACTCTGATTATCCAAGTCCTCAAAATTCGCTTTCATCTGAATACTCATCATTCAAGCCTCCTAGTTTTAGT CGTGTTGCTGGCTTACTCCCTGGTGATGTTGTTCAAGCTAGGATGGACGATATCGAAATAATGAATACCATGGATAGTTTTGTGAAAGCTCAAATAGTCA TCTATGATCAAAACTCTTCTTTATACAAAAACATCGACACGCAGGTCACAGTGAGCCTGGCTACATTGTCATTTTTCTGCCGTAGACCCACAATTCTTGC AATCATGGAATTTGTCAATGCCATTAATGTTGAGGATGAAAAATGTGAAACTTTTAGTGACAATTCACCATCAGCAATGGTAAAACATGACAGTTCTGGA GATGACATTGTCGATGATCAAGATTTAACAACAATTGAGAAGCCTGCTGTTAAGGGTTTGCTAGGGAAGGGAAAATCCCGGATCATTTTCAATTTGATAT TAAAAATGGACCGTGCTCAGATTTTGTTAATGCATGAAAATGAAACTAAGTTTGCTACTTTGTCACAAGATAATCTGCTTACTGATATCAAGGTTTTCCC AAGCTCTTTCAGTATAAAGGCAGCCCTGGGAAATCTAAGAATTAGTGATGATAGTCTTCCCGGTGGTCATGCATATTTCTGGATCTGTGATATGAGAAAT TACGGGGGCAGTTCATTTGTTGAGTTAGTTTTTACATCATTCAGTGCTGATGATGAAGACTATGAAGGTTATGAATATAGCCTTTTTGGGCAGCTTTCAG AAGTGCGCATTGTTTATTTGAATCGCTTTATTCAGGAGGTTGTGAGTTACTTTATGGGTCTCATTCCCAACAATTCAAAAAATTTTGTCAAATTAAAAGA TCAAGTAACAAATTCTGAGAAGTGGTTCACAACCAGTGAGATTGAAGGATCACCAGCTCTGAAGTTGGATCTTTCACTCAGGAAACCTATAATATTGATG CCTCGAAGAACAGATAGTCCTGATTACTTGAAACTTGATGTGGTTCACATAACCATTCAGAACACTTTTCAATGGCTTGGTGGCAGCAAAGGGGAGTTGC ATGCTGTTCATTTAGAAATATTAACAATTAAGGTGGAGGACATCAATTTAAATGTTGGCAGTGGAACAGAATTAGGTGAAAGCATAATCCAAGATGTAAA TGGGGTTTCTATTCTCATTCGTAGGTCACTTCGAGACCTGTTGCATCAAATACCAATTACAGAAGCTGCAATCAAGATGGAGGAGTTAAAAGCAGCTCTG ACAAGCAGGGATTACCAGATTATCACTGAATGTGCAACGTCAAATATTTCCGAGACTCCACACACTGTGCCCCCACTGAACCATGACTCTGTAGCATCTT CTGCTGATGTTGTAAAACCTATTGCTCTTCAGGATCCAAGTGGTGTTGAAGCTGAGACACGGAATGGGGAAGCCTGGATTTCTTTGAAAGTTTCTGTTGC GATCAATCTAGTTGAATTGTGCTTATATGCTGGGGTTGCCAGAGATGCATCGCTGGCCACCATAAAGGTTAGTGGTGCTTGGCTCCTCTACAAGTCTAAT AACGCAGGGGAAGGTTTTCTCTCAGCAACACTTAAAGGCTTCACTGTGATTGATGATCGTGAGGGAACCGAAGAAGAGTTTAGGCTGGCGGTAGGAATGC CTGAGAAGATTGGTTATAGTCTCCTTCACTTGTCATCTGATGATGAAAACCAGCATATATCTGATTTAAATGTGACGAAACAAGATGAGATCAAACCAGT CCCTACAATGCTCATATTTGATGCAAAATTTGGTCAATACTCAACATTTATTTCTCTCTGTGTCCAACGCCCACAACTGCTCGTTGCACTTGATTTTCTT CTGGCTGTTGCTGAGTTTTTTGTTCCAACAGTAGGTGATATGCTGTCAAATGAGGAAAGTAGAACCCCCATGCACGAGGTTGATGCAGTTGTTCTGGATC AGCCAATTTATCAGCAATCCTCTGCTGAAATCTCTCTCTCTCCATTGAGACCTTTAATTGTTGATGATGAAAGATTTGATCATTTCACTTATGATGGTAA AGGTGGAATATTGCATTTAAAAGATAGACAGGGAGCTAATCTCTCTGCACCCAGCAAGGAGGCTATTATATATGTTGGAAGTGGGAAAGAGTTGCAGTTT AAAAATGTTGTGATCAAGAATGGGAAATATTTGGATTCTTGTATTTTTTTGGGAAGTGATAGTGGCTATTCTGTCTCAAGGAATGATCAGGTCCAATTGG AGGGACAGGATGATGCTCCTCTCACTGAATCTTCAAGAAGTATTAATGATCAACCATCTGAAGACACTCTGGTTGACAGATCCACTGAGTTTATTATTGA GTTACAGGCCATTAGCCCGGAGCTTACCTTTTATAATACATCAAAAGATGTAGGGGTGCCATCAAATCTCTCCAACAAACTTTTGCATGCACAATTAGAT GCATTTGCCAGGCTTGTTTTGAAGGGCAATACGATTGAAATGACAGCAAATGTACTTGGTTTGATGATGGAGAGTAATGGAATTACAATCCTGGAACCTT TTGACACCTCAGTTAAATATTCAAATGCTTCTGGGAAGACCAATATACATCTATCTGTTTCAGATATATTCATGAACTTTACATTCAGCATCTTGAGACT GTTTTTAGCTGTTGAAGAGGACATTTTATCATTTCTGAGGATGACGTCAAAGAAAACAATACCCTGTTCTCAGTTCGACAAAGTTGGAACAATTACAAAT CCATATACTGATCAGATATATGCCTTCTGGAGACCTTGCGCACCACCTGGTTATGCAATTCTTGGTGACTATTTGACACCATTGGACAAGCCGCCTACAA AAGGAGTTGTCGCTGTGAATACTAACTTTGCAAGAGTCAAAAGACCCATATCTTTCAAACTAATCTGGCCACCTTTAGCTTCTGAAGAAATTTCTGGTCA AGATGTGGCCAATTCTAGCTTCTTACTAGATAGTTTCCTTACCAAGGAAGGCAACTACTGTTCTATTTGGTTTCCTGAAGCACCCAAAGGTTATGTTGCG TTGGGTTGTGTAGTGTCCCCTGGAAGAACACAACCCCCTCTATCTGCTGCTTTCTGCATCTCGGCTTCTCTAGTTTCTTCTTGTTCCCTCAGGGATTGTA TTACCATCAATTCTGTCAATTCATACCAGTCAACTTTAGCCTTTTGGCGTGTGGACAATTCTGTTGGTACTTTCTTGCCAGCAGATCCTGTGACTCTCAG TTTAATAGGTAGAGCATATGAATTGCGTGATGTAAAATTTGGGTTTCTAGAATCTTCTTCAGCATCCAGTGGCTCAGATGTACAAGCTTCTCCTTCCGGT AACGTTGACATACAACCTGAAAATTCGACAACTGTAAACTCTGGCCGGGGTTTTGAAGTTGTTGCCAGTTTTCAGTTGATATGGTGGAACCAGGGTTCGA GCTCAAGGAATAAACTATCTATATGGCGTCCGGTAGTCCCCCATGGCATGGTATATTTTGGTGATATTGCTGTTACAGGGTATGAGCCTCCAAATACCTG CATTGTCCTTCATGATACTGAGGATGGAGTGCTTTTCAAAGCACCTCTGAGTTTCCAGCCTGTTGGACAGATTAAGAAACAGAGGGGAATGGACAGTATT TCTTTCTGGATGCCTCAAGCTCCCCCGGGCTTTGTTTCCTTAGGTTCTATTGCATGTAAAGGCCCACCAAAGCAATTTGATTTCAGTAAATTAAGATGCA TGCGGAGCGATATGGTTACTCAGGATCGGTTCTTGGAGGAAAGCCTATGGGATACTTCTGATGCCAGGTATACAAAAGAATCATTTAGCATATGGTCAGT TGGTAACGAATTGGGTACCTTTCTTGTCCGCAGTGGTTTAAAAAAACCACCAAGAAGGTTTGCTCTGAAGTTGGCAGATCCCAATTTACCAAGCGGTTCA GATGATACTGTCATAGATGCTGAAGTTAGAACGTTTTCTGCAGCCATTTTTGACGACTATGGTGGTTTGATGGTTCCATTGTTCAATGCACATTTAACTG GAATAGGTTTCAGCTTGCATGGAAGAGCTGACTACTTGAATTCTACTGCCAGTTTCTCTCTGGTTGCCAGATCATATAATGATAAGTATGAATCGTGGGA GCCCCTTGTTGAGTCAGTAGATGGATATCTTAGGTACCAATATGATCTTAATGCCCCAGGGGCAGCATCTCAGCTACGCTTGACAACATCCAGGGATCTA AACATAAATGTTTCAGTATCTAATGCTAATATGATTATCCAAGCTTATGCGAGCTGGAGCAACCTTAGCCATGCCGATGAATATCATAAAAAAAGAGAAG CAGTTTCTCCAACACATGGTCTGAGATCTGTCATTGATGTCCATCAAAGGAGAAACTATTATATAATTCCACAAAATAAACTTGGTCAAGATATTTTTAT TCGAGCAGCTGAAAATGCAGGCTTCTCGAATGTGTTAAGAATGCCATCTGGGGACATGACGCCTGTGAAAGTTCCTGTTTCAAAAAATATGATGGAATCT CACTTGAAAGGAAAACTTAGCACAAAAGATAGAACAATGGTGACAGTTGCTATAGTGGATGCAGAGTTGCCAAGAGTTAGGGGGTTGACTTCTAATCTAT ACGTTGTAGCACTCCGTCTTACACCAAACCAAAACCTTGGTAGTGAATCATTGCTTCATCAACAAAGTGCACGTACAAGTGGAAGCATTTCAAACTTCTT GTCTGATGAGCAGCAATTGGTCAACTGGAGTGAAATATTTTTCTTTAAAGTTGATTCCCCGGACAAGTACTTGCTGGAGCTAATTGTGACTGATTTGGGA AAAGGTGATACTGTTGGATTCTTTTCAGCTCCCTTGAATCAGATAGCTGGAAACATCAAAGAAAGCTCTTATCAGTTTGATTATCTGAATTACTTAACCT GGATTGATTTATCTTCATCCAATTCTATGACTATGACTCAAGGAGATGAACACACGAAGTCATCTGGGAGAATAAGATGTGCTGTACTCTTGTCACCCAG GTCTGAAGCCATGGACAAAGATGAAGTTTTTATTGGCAAAAGAAAATCTGGATTTATTCAGATTAGTCCTAGCATGGAAGGGCCTTGGACTACTGTGAGG CTACACTATGCTGCACCTGCTGCTTGTTGGCGGTTAGGAAATGACGTAATTGCCAGTGAAGTAAGTGTAAGGGATGGCAATATATATGTGAACATGAGGT CTCTTGTTTCGGTGCGTAACAACACAGATTTTATACTTGAGTTATGCCTTGTGCCCAAAACTTCAAAGGAAAACATCAGGAACATCAGGTCACTGAGTAT TGCAAGCAAACCTGAAGGTTTACAGATTGATGGTAGCACAGTGCAGACAGATGAGATTTTTGAAACCGAAAACTACAACCCATCTCTTGGCTGGGTTGGC TACTCAAATTATTCAGATGGTGGAGATCACAATCAAGAAATCTCTAGAGTTGGATTACCATCAGGCTGGGAATGGACTGAGGATTGGCATTTGGATACCT TGTCCGTCAATGATGCTGATGGTTGGGTATATTCTCCAGATGTTGAGAGCCTTAAGTGGCCTGAGTCATCTAATCCTTTAGAATTTGCGAACCATGCAAG GCAAAGGAGATGGATTAGGACCAGGAAACAAATTTTGTATGATGTAAAGCAGGAAGTATCCGTTGGATCACTGAAGCCTGGAGATTCTATGCCTCTTCCT TTACCAGCCTTGACACAATCTGGTGTGTATATATTGCAATTAAAGCCTTCAAATGTTAGTACTCATGATGAATATTCATGGAGTTATATGGTGGATAAGC CTGGACAACCTGAGGGTTTTGGTGAGCCAAAAGATTCTGGAATATGTATATCATCTCTCACAGAGTCTGAAGAACTATTGTACTGCAGCCAGATAAGTGG TACCTCTTCAAAGGGTTCCCATAAATTGTGGTTTTGCGTAAGCATACAAGCCACAGAGATTGCAAAAGACATTCGTTGTGATCCTATCGAGGATTGGTGT CTTGTGGTCAAATCTCCATTAACTTTTAGCAATTGCCTTCCCTTGGCAGCTGAATACTCTGTACTCAATATGCAACCACGTGGTCATTTTGTAGCATGTG CTAGGGGAGTATTTTCTCCTGGAGAAACAGTGAAGGTTCACACTGCTGACATAAGAAAGCCTTTATTCCTTTCACTACTTCCACAAAAAGGATGGGTTCC GATGCATGAAGCTGTTCTTATATCTCATCCTAGTGGACTTCCATCAAAAACAATAAGCTTAAGAAGTTCAATTTCTGGAAGGATTGTCCAACTCGTTCTT GATCACAATTATGACAAGGAACAACCACTGCTAGCAAAGATCATTAGAGTCTATGCTCCTTATTGGTTTTCAATCACCAGATGTCCTCCACTTAGATTTA GGCTTGTAGATCTAGCGGAGGAAAAAAATCCACGAAAAATTGCTCTTCCATTTATGTCCAAAAGGAGAGATCAAGAAATTCTCGGGGAAATAACTGAAGA GGAAATATATGAAGGTCATACAATTGCTTCGGCATTGAACTTTAATTTGCTGGGCCTATCAGCGTCTATCACTCGATCTGACCAGGAGCAGCACTTTGGC CCTGTTAAAGATCTTTCTCCCCTTGGTGATATGGATGGCTCTCTGGATTTCTATGCTTACGATGCTGATGGTAACTGCATGTGGCTTTTTGTTTCTACAA AACCATGTCCTTACCAATCTGTCCCTACTAAGGTAATTTATGTTCGGCCATTCATGACCTTTACTAATAGAATTGGTCAAGACATGTTTATTAAGCTAAA CAGTGAAGATGAACCAAAGGTTCTACGGGCATCTGATTCAAGAATTGCCTTTGCATACCGCAAAACCACTGAAACTGATAAAATCCAGGTTCGGCTGCAA GATACAGAATGGTCGTTTCCAGTTCAAATTTCAAAAGAGGACACTATCTTTCTGGTTTTGAGGGGTCAAAATCATAGTTGGAGATTTTTTAGGACAGAAA TACGAGGATATGAAGAAGGATCACGTTTTATAGTTGTATTCCGCCCCGGATCATCAGATGGTCCCATCAGAATTGAGAACAGAACTGACAAGATGATAAG CATTCGGCAATCTGGGTTTGGAGACAATGCCTGGATTAAGTTGGAACCTCTTTCAACAAAGAAATTTGCTTGGGAAGATCCATATGGTCAAAAAATTGTT GATGCCATGGTTGATAGTGACAGTAGAAATAGTATTTGGAAACTTGATATGGAAGGGACTGGGATATCTTCTGCAGAAGATGCTGAATTAGGATTGCAGT TTCATGTTGTAGAAATGGGAGATGTCAAGGTTGGGAGGTTCACTAATTATCAAGGTTCAACTTCACGTGAAGAAAGCATGTCTCTGACACCTGCTGGAAA CTGGGGAACCTCACATGTGCAGAGCGCGATGCAAAATGCTGCAGCGCCTATAGAGCTTATAGTCGAGCTGGGAGTGGTTGGGATTTCTGTTGTGGATCAT AGACCAAAAGAGCTCTCTTACATGTACTTGGAGAGAGTATTTGTATCATATTCAACTGGCTATGATGGTGGGTCTACAAGCAGGTTCAAGCTCATACTAG GTAATTTGCAGATTGATAATCAACTCCCTCTAACATTGATGCCAGTGCTGTTTGCACCCGAGCAGACCACTGATACCCATCATCCTGTATTTAAGATGAC TTTTACAATACGCAATGAGAGCACTGATGGCATCCAGGTCTACCCACGTTTATATATACGGGTTACTGATAAGGTTTGGAGGCTTAATATTCATGAACCA ATTATCTGGGCATTGGTGGATTTCTATAACAATCTTCAGCTAGATCGTGTACCCCAAAGTTCTAACGTCACAGAAGTTGATCCAGAGATACATATAGGGT TAATTGATGTTTCAGAAATAAGGCTGAAGGTTTCCCTGGAGACAGAACCATCTCAGAGACCTCATGGGGTTCTAGGTGTATGGAGCCCAATACTGTCTGC TGTTGGAAATGCACTCAAAATTCAGGTGCATCTCAGGAGAGTGATGCATAGGGACAGGTTCATGCGAAAGAGTTCCATTGCTCCTGCCATTCAAAATCGT ATTTGGAGAGATCTGATACATAATCCTTTACATCTGATATTTTCTGTAGATGTACTTGGTATGACAAGTTCCACATTGTCTTCTCTTAGTAAAGGGTTTG CCGAGCTTTCAACTGATGGACAGTTTCTTCAATTACGCTCGAAGCAGGTTGAGTCACGAAGAATCACTGGGGTAGGTGATGGAATTATTCAAGGAACAGA AGCTTTTGCACAAGGTGTTGCCTTTGGGGTATCTGGAGTTCTGACAAAGCCTGTGGAGAGTGCCAGACAGAATGGATTCTTAGGACTGGCTCATGGACTG GGGCGTGCCTTCATAGGATTTATTGTGCAACCTGTTAGTGGGGCACTAGATTTTTTCTCCTTGACTGTTGATGGAATAGGTGCTAGTTGCTCAAAATGTT TAGGGGCTCTTAATAACAAGACCACTCCCCAGAGGTTCAGAAACCCACGGGCTATTCGTGCTGATGGTATTCTGAGAGAGTATTCTGAGAAAGAGGCTTC TGGTCAGATGATACTTTACCTTGCTGAAGCAAGTCGACATTTTGGCTGTACTGAAATATTCAAGGAGCCCTCAAAATTTGCATGGTCTGATTACTATAAA GACCATTTTTTCGTTCCTTATCAAAAGATTGTTCTAGTGACGAACAAACGAGTCATGCTGCTGCGGTGCTTTGATCTAGACAAGATAGATAAGAAACCTT CCAAAATCATGTGGGATGTGGCATGGGAAGAGCTTATGGCCCTGGAGTTGGCAAAAGCAGGCTGTCACCAACCTTCTCACTTGCTCCTCCATCTTAAGAG TTTTAAGAGATCAGAAAATTTTGTCCGGGTCATAAAGTGCAATGTTGGAGAAGAATCAGAAGACATGGAAGCCCAAGCTACTAAGATCTGTTCAGTTGTA CGTAGAGTGTGGAAAGCATACAAGTTTGACATGAAAACCCTTGTTCTAAAGGTTCCTTCAAGCCAGAGACATGTCTATTTTGCTTGGAGTGAAGCTGATG GTAGAGAACCACATAATCCAAATAAAGCTATTATCAAATCAAGAGAGCTATCTTCATCAAATTATGCATCTGATGAAGGGAGATTTGTTAAACATGCAAT CAACTTTTTGAAGATTTGGAGCAGTGAACAAGAATCTAAAGGCCGGTGCAAACTATATAGGAAGCAGGTTACAGAAGACGGTGGAATAGGTAGCATTTGG AGACCCATTTGTCCAGACGGGTATATCTCCATTGGGGACATAGCTCATGTTGGTGGCCATCCTCCAAACGTGGCTGCTGTTTATCGGAACACTGACGGAC TGTTTGCACTTCCTCTGGGTTATGACCTGGTGTGGAGGAATTGTCAGGATGACTACAAAGCTCCAGTATCTGTTTGGCATCCACGGGCTCCAGAAGGATA TGTATCTCCTGGATGTGTTGCTGTTTCCAACTTTGAGGAGCCAGAACCTTGTTCGGTATACTGTGTAGCGGAGTCACTAGTGGAGGAAACAGAATTTGAA GAGCAGAAAGTTTGGTCTGCTCCAGATTCATACCCATGGGCTTGTCATATTTATCAGGTCAGGAGCGATGCTCTTCACTTTGTTGCTCTTAGACAGACAA AGGAAGAATCTGATTGGAAGCCAATGAGGGTGGCTGATAACCTTCCGCCTCGGTTACAATTATCAGAACCTCAGTGA
AA sequence Show only first row Show all	>Potri.001G148800.1 pacid=42791440 polypeptide=Potri.001G148800.1.p locus=Potri.001G148800 ID=Potri.001G148800.1.v4.1 annot-version=v4.1 MLEDQVASLLQRLLGNYVRGFNKEALKISVWKGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKLKVPWSRLGQDPVLVYLDRIFLLAEPATQVDGLTE DVVQEAKKSRVREMEMKLLEKAQQLTSEMNTSWLGSLINTIIGNLKLSISNIHIRYEDLESNPEHPFAAGVTLGKLSAVTVDDNGMETFVSGGALDRIQK SVELDQLAIYLDSDISPWNIDKSWEDLLPSEWLQVFRFGTKDGKPADHMMVKHSYILQPVTGDATYSKLRRKESANSDQPLQKAVVNLNDVTLSLSKDGY RDILKLADNFAAFNQRLKFAHYRPLLPVKSNPRSWWRYAYKAVSDQTKKASGKLSWEQVLRYAGLRKRYISLYASLLKSDPSHEIVDDNEEIEELDRELD IELILQWRMLAHKYVKQSMESDRYSRKQKPKTSWWSFGWNNKSDKDESEQFHFSEEDWEQLNKLIGYREGENEQSVIINEKADTLNMSLEVHMKHNASKL VDGAREYIAELSCEDLDCSIKLYPETKVFDLKLGSYQLSSPNGLLAESATASGSLVGVFYYKPFDAKVDWSMAVKAAPCYMTYLKDSIDGIINFFESSNA VSQTIALETAAAVQMTFDGVKRSAQQQVNRALKDHARFLLDLDIAAPKITIPTEFYPDNIHSTKLLLDLGNLVIRSEDDYERRLSEDQNMYLQFDLVLSD VCAFLVDGDYRWSQTASQGSASSVRSEGVSFLPVIDRCGVILTFQQIRLENPSYPSTRLSVRVPSLGFHFSPARYHRLMRVAKIFQEEGSENSDLLRPWN QSDFEGWLSLLIRKGMGNREAVWQRRYICLVGPFLYVLENLDSKSYKHYLSLRGKQVYHLPAELLGGVEHVLTICDAARPLSKVVEDANALILLCDSDDS QRNWQSRLQGAIYSASGSAPITTLSETSSDPEDSETELNDSGEASNILKMERIFITGALDELKICFNYNRQRDLSFVNVLLAEENHLFEFRAIGGQVELS IRENDMFIGTVLKSLEIEDLVCCNGVSQPCFLARSFVQSSDVHLSFDDTGNQTFDNNNSTPSEGEDKFYEAPENLVNSDYPSPQNSLSSEYSSFKPPSFS RVAGLLPGDVVQARMDDIEIMNTMDSFVKAQIVIYDQNSSLYKNIDTQVTVSLATLSFFCRRPTILAIMEFVNAINVEDEKCETFSDNSPSAMVKHDSSG DDIVDDQDLTTIEKPAVKGLLGKGKSRIIFNLILKMDRAQILLMHENETKFATLSQDNLLTDIKVFPSSFSIKAALGNLRISDDSLPGGHAYFWICDMRN YGGSSFVELVFTSFSADDEDYEGYEYSLFGQLSEVRIVYLNRFIQEVVSYFMGLIPNNSKNFVKLKDQVTNSEKWFTTSEIEGSPALKLDLSLRKPIILM PRRTDSPDYLKLDVVHITIQNTFQWLGGSKGELHAVHLEILTIKVEDINLNVGSGTELGESIIQDVNGVSILIRRSLRDLLHQIPITEAAIKMEELKAAL TSRDYQIITECATSNISETPHTVPPLNHDSVASSADVVKPIALQDPSGVEAETRNGEAWISLKVSVAINLVELCLYAGVARDASLATIKVSGAWLLYKSN NAGEGFLSATLKGFTVIDDREGTEEEFRLAVGMPEKIGYSLLHLSSDDENQHISDLNVTKQDEIKPVPTMLIFDAKFGQYSTFISLCVQRPQLLVALDFL LAVAEFFVPTVGDMLSNEESRTPMHEVDAVVLDQPIYQQSSAEISLSPLRPLIVDDERFDHFTYDGKGGILHLKDRQGANLSAPSKEAIIYVGSGKELQF KNVVIKNGKYLDSCIFLGSDSGYSVSRNDQVQLEGQDDAPLTESSRSINDQPSEDTLVDRSTEFIIELQAISPELTFYNTSKDVGVPSNLSNKLLHAQLD AFARLVLKGNTIEMTANVLGLMMESNGITILEPFDTSVKYSNASGKTNIHLSVSDIFMNFTFSILRLFLAVEEDILSFLRMTSKKTIPCSQFDKVGTITN PYTDQIYAFWRPCAPPGYAILGDYLTPLDKPPTKGVVAVNTNFARVKRPISFKLIWPPLASEEISGQDVANSSFLLDSFLTKEGNYCSIWFPEAPKGYVA LGCVVSPGRTQPPLSAAFCISASLVSSCSLRDCITINSVNSYQSTLAFWRVDNSVGTFLPADPVTLSLIGRAYELRDVKFGFLESSSASSGSDVQASPSG NVDIQPENSTTVNSGRGFEVVASFQLIWWNQGSSSRNKLSIWRPVVPHGMVYFGDIAVTGYEPPNTCIVLHDTEDGVLFKAPLSFQPVGQIKKQRGMDSI SFWMPQAPPGFVSLGSIACKGPPKQFDFSKLRCMRSDMVTQDRFLEESLWDTSDARYTKESFSIWSVGNELGTFLVRSGLKKPPRRFALKLADPNLPSGS DDTVIDAEVRTFSAAIFDDYGGLMVPLFNAHLTGIGFSLHGRADYLNSTASFSLVARSYNDKYESWEPLVESVDGYLRYQYDLNAPGAASQLRLTTSRDL NINVSVSNANMIIQAYASWSNLSHADEYHKKREAVSPTHGLRSVIDVHQRRNYYIIPQNKLGQDIFIRAAENAGFSNVLRMPSGDMTPVKVPVSKNMMES HLKGKLSTKDRTMVTVAIVDAELPRVRGLTSNLYVVALRLTPNQNLGSESLLHQQSARTSGSISNFLSDEQQLVNWSEIFFFKVDSPDKYLLELIVTDLG KGDTVGFFSAPLNQIAGNIKESSYQFDYLNYLTWIDLSSSNSMTMTQGDEHTKSSGRIRCAVLLSPRSEAMDKDEVFIGKRKSGFIQISPSMEGPWTTVR LHYAAPAACWRLGNDVIASEVSVRDGNIYVNMRSLVSVRNNTDFILELCLVPKTSKENIRNIRSLSIASKPEGLQIDGSTVQTDEIFETENYNPSLGWVG YSNYSDGGDHNQEISRVGLPSGWEWTEDWHLDTLSVNDADGWVYSPDVESLKWPESSNPLEFANHARQRRWIRTRKQILYDVKQEVSVGSLKPGDSMPLP LPALTQSGVYILQLKPSNVSTHDEYSWSYMVDKPGQPEGFGEPKDSGICISSLTESEELLYCSQISGTSSKGSHKLWFCVSIQATEIAKDIRCDPIEDWC LVVKSPLTFSNCLPLAAEYSVLNMQPRGHFVACARGVFSPGETVKVHTADIRKPLFLSLLPQKGWVPMHEAVLISHPSGLPSKTISLRSSISGRIVQLVL DHNYDKEQPLLAKIIRVYAPYWFSITRCPPLRFRLVDLAEEKNPRKIALPFMSKRRDQEILGEITEEEIYEGHTIASALNFNLLGLSASITRSDQEQHFG PVKDLSPLGDMDGSLDFYAYDADGNCMWLFVSTKPCPYQSVPTKVIYVRPFMTFTNRIGQDMFIKLNSEDEPKVLRASDSRIAFAYRKTTETDKIQVRLQ DTEWSFPVQISKEDTIFLVLRGQNHSWRFFRTEIRGYEEGSRFIVVFRPGSSDGPIRIENRTDKMISIRQSGFGDNAWIKLEPLSTKKFAWEDPYGQKIV DAMVDSDSRNSIWKLDMEGTGISSAEDAELGLQFHVVEMGDVKVGRFTNYQGSTSREESMSLTPAGNWGTSHVQSAMQNAAAPIELIVELGVVGISVVDH RPKELSYMYLERVFVSYSTGYDGGSTSRFKLILGNLQIDNQLPLTLMPVLFAPEQTTDTHHPVFKMTFTIRNESTDGIQVYPRLYIRVTDKVWRLNIHEP IIWALVDFYNNLQLDRVPQSSNVTEVDPEIHIGLIDVSEIRLKVSLETEPSQRPHGVLGVWSPILSAVGNALKIQVHLRRVMHRDRFMRKSSIAPAIQNR IWRDLIHNPLHLIFSVDVLGMTSSTLSSLSKGFAELSTDGQFLQLRSKQVESRRITGVGDGIIQGTEAFAQGVAFGVSGVLTKPVESARQNGFLGLAHGL GRAFIGFIVQPVSGALDFFSLTVDGIGASCSKCLGALNNKTTPQRFRNPRAIRADGILREYSEKEASGQMILYLAEASRHFGCTEIFKEPSKFAWSDYYK DHFFVPYQKIVLVTNKRVMLLRCFDLDKIDKKPSKIMWDVAWEELMALELAKAGCHQPSHLLLHLKSFKRSENFVRVIKCNVGEESEDMEAQATKICSVV RRVWKAYKFDMKTLVLKVPSSQRHVYFAWSEADGREPHNPNKAIIKSRELSSSNYASDEGRFVKHAINFLKIWSSEQESKGRCKLYRKQVTEDGGIGSIW RPICPDGYISIGDIAHVGGHPPNVAAVYRNTDGLFALPLGYDLVWRNCQDDYKAPVSVWHPRAPEGYVSPGCVAVSNFEEPEPCSVYCVAESLVEETEFE EQKVWSAPDSYPWACHIYQVRSDALHFVALRQTKEESDWKPMRVADNLPPRLQLSEPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	0	1
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	3.31	0.7877
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	3.87	0.7778
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	8.66	0.7661
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	8.94	0.7373
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	9.38	0.7354
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Potri.010G028200 [exp]	11.31	0.7514
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	15.58	0.7426
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	16.49	0.7716
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	19.28	0.7343	XRN4.2
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	20.71	0.7335	Pt-UBP12.1

Compare expression of checked genes

Potri.001G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.