Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BMY.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17090 885 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 595 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G15210 452 / 4e-155 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 437 / 1e-148 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 434 / 8e-147 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 409 / 2e-137 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 385 / 2e-126 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 334 / 2e-106 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 300 / 3e-95 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085500 [exp] 1028 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 632 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 620 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G143500 [exp] 454 / 1e-154 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083800 [exp] 448 / 8e-153 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.017G040800 [exp] 446 / 4e-151 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G087600 [exp] 431 / 9e-146 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083700 [exp] 421 / 2e-140 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 414 / 4e-137 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011035 [exp] 829 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 823 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 770 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 763 / 0 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 595 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 587 / 0 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004398 [exp] 470 / 1e-161 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039701 [exp] 456 / 2e-154 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 439 / 8e-149 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 427 / 8e-145 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.001G148900.2 pacid=42792460 polypeptide=Potri.001G148900.2.p locus=Potri.001G148900 ID=Potri.001G148900.2.v4.1 annot-version=v4.1 ATGACTTCAGCACTGCAATCTTCAACTTCTTTTATCAGTCTAAAAGACACCAGAAGCCCTAAAACTCCTGATGATTTTTCTGGCACAATTTGCTTTGCGC ATATCAAGCCATCATGCCGTCTTCAAGCAAAGAATTCAATGCAAGAAGCACAGCTTTCACACGATGAAATCTTGATGACAGAAGGAAGGAAAAGCAAGAA GGGGGGAGAACTACATGCAATATCAGGTCCTCGTAGTAGCAATGACTCTAAAGTGCCTGTGTTTGTGATGCTGCCACTTGACACAATAACAATTGGGGGG AACTTGAACAAGCCAAGAGCAATGAATGCTAGCTTGATGGCCTTGAGAAGTGCAGGAGTCGAAGGAGTGATGGTGGATGCTTGGTGGGGATTGGTGGAGA AAGATGGGCCTTTAAAATACAACTGGGAAGGGTATGCAGAGCTTGTGCAGATGGTGCAAAAGCATGGCCTGAAGCTTCAAGTAGTCATGTCCTTTCATCA GTGTGGAGGAAATGTTGGAGATTCTTGCAGCATTCCCCTGCCTCCATGGGTGCTTGAAGAGATGAGCAAAAACCCTGATCTTGTCTACACAGACAGATCA GGAAGGAGGAATCCTGAGTACATTTCCTTGGGCTGTGACTCGTTACCAATACTAAGAGGAAGGACACCCATACAGGTCTACAGTGATTACATGAGGAGCT TCCGCGAGAGATTCAAAGATTACCTAGGAGATGTTATTATGGAAATTCAAGTGGGGATGGGTCCATGTGGAGAGCTGAGATACCCAGCTTATCCAGAAAC CAATGGCACATGGAGGTTTCCTGGAATTGGAGAATTCCAATGCTATGACAAGTACATGAGAGCTTCACTGGAAGCATCAGCTGAAGCACTTGGAAAGAAA GACTGGGGACGAGGAGGACCCCATGATTCCGGCCAGTATAATCATTTTCCTGAAGAAACTGGATTTTTCCGCAGGGATGGAACATGGAATACTGAATATG GACAGTTCTTCTTAGAATGGTACTCAGGGAAGCTACTAGAGCATGGCGAAAAAATCCTAGCAGCTGCAGAAGGAATATTTCAAGGAACTGGAGCACAACT ATCGGGAAAGGTAGCAGGAATTCATTGGCATTACAGAACGAGGTCTCATGCAGCTGAACTAACTGCAGGATACTATAATACTAGACACCATGATGGGTAC CTACCAATAGCACGGATGTTCAGTAAACATGGGGTTGTATTCAATTTCACCTGCATGGAAATGCGAGATGGAGAACAGCCAGAACATGCAAATTGTTCTC CACAAGGATTAGTGCGGCAAGTGAAGATGGCTACGAGGACTGCTGGAACTGAACTTGCTGGGGAGAATGCATTGGAGAGGTATGATGCAGGTGCATACAC ACAAGTTTTGGCAACAAGTAGATCAGAATCTGGCAATGGATTGACTGCATTTACATATCTAAGAATGAATAAGAAGTTGTTTGAAGGGGACAACTGGCGG CAATTAGTGGAGTTTGTTAAAAGCATGTCAGAAGGTGGTCGGAACGAAAAACTATCGGAGTGTGACTCCCATGGAACTAACCTTTACATTGGCTTTATCA AAGACAAGAGTGTTCAGAAAACTAAGGAAGCTGCTCTGGCATAA
AA sequence Show only first row Show all	>Potri.001G148900.2 pacid=42792460 polypeptide=Potri.001G148900.2.p locus=Potri.001G148900 ID=Potri.001G148900.2.v4.1 annot-version=v4.1 MTSALQSSTSFISLKDTRSPKTPDDFSGTICFAHIKPSCRLQAKNSMQEAQLSHDEILMTEGRKSKKGGELHAISGPRSSNDSKVPVFVMLPLDTITIGG NLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPLKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRS GRRNPEYISLGCDSLPILRGRTPIQVYSDYMRSFRERFKDYLGDVIMEIQVGMGPCGELRYPAYPETNGTWRFPGIGEFQCYDKYMRASLEASAEALGKK DWGRGGPHDSGQYNHFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGEKILAAAEGIFQGTGAQLSGKVAGIHWHYRTRSHAAELTAGYYNTRHHDGY LPIARMFSKHGVVFNFTCMEMRDGEQPEHANCSPQGLVRQVKMATRTAGTELAGENALERYDAGAYTQVLATSRSESGNGLTAFTYLRMNKKLFEGDNWR QLVEFVKSMSEGGRNEKLSECDSHGTNLYIGFIKDKSVQKTKEAALA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	0	1	Pt-BMY.1
AT5G38710			Methylenetetrahydrofolate redu...		Potri.004G106400 [exp]	1.41	0.9496
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	2.82	0.9492
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	3.00	0.9496
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	3.16	0.9395
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.004G116100 [exp]	6.32	0.9202
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	6.48	0.9250
AT5G54585			unknown protein		Potri.011G130400 [exp]	8.06	0.9028
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	10.39	0.8973
					Potri.005G205000 [exp]	10.95	0.9029
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	12.12	0.8962

Compare expression of checked genes

Potri.001G148900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.