Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) AT4G17660 447 / 4e-157 Protein kinase superfamily protein (.1) AT2G28940 379 / 3e-129 Protein kinase superfamily protein (.1.2) AT3G09830 375 / 2e-128 Protein kinase superfamily protein (.1.2) AT5G03320 369 / 5e-126 Protein kinase superfamily protein (.1) AT2G39110 353 / 3e-119 Protein kinase superfamily protein (.1) AT2G28930 341 / 7e-115 APK1B protein kinase 1B (.1.2.3) AT2G02800 336 / 6e-113 Kin2, APK2B protein kinase 2B (.1.2) AT3G28690 335 / 1e-112 Protein kinase superfamily protein (.1.2.3) AT1G07570 333 / 5e-112 APK1A Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085300 [exp] 649 / 0 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.014G052700 [exp] 536 / 0 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.009G031500 [exp] 388 / 5e-133 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 380 / 1e-129 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 375 / 6e-128 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.008G036800 [exp] 374 / 1e-127 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G126000 [exp] 365 / 8e-124 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G093700 [exp] 339 / 3e-114 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.001G240400 [exp] 339 / 3e-114 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040135 [exp] 545 / 0 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10001088 [exp] 538 / 0 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10038711 [exp] 382 / 5e-130 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 377 / 1e-127 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 374 / 6e-127 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 367 / 1e-124 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 341 / 1e-115 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005255 [exp] 340 / 3e-113 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 339 / 6e-113 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10010835 [exp] 333 / 5e-112 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G149100.1 pacid=42792993 polypeptide=Potri.001G149100.1.p locus=Potri.001G149100 ID=Potri.001G149100.1.v4.1 annot-version=v4.1 ATGAAGTGTTTCTATATTTTCAAGGATAAATTTAAGAACAAGAAAGGACAAGCAAATTCAGCCCCAGAACCGAGTGATCACCAAAGCAAATCAAATAGTT CACCTCGTCGTACAGCGAAATCCTTACCATCTCCAAGAAGCATACCTGAATTGTACAAAGAGAAGGAGCACAATTTGCGAGTTTTCAGTTTTCAAGAGCT TAAAGAGGCAACAAATGGTTTTAACAGATTGCTTAAGATTGGAGAAGGTGGCTTTGGGAGTGTGTATAAGGGAACAGTCAGACCTGCCAGTGGTCAAGGC GATCCTGTAGTGGTTGCCATTAAAAAGCTCAACAATCATGGCTTACAGGGTCATAAACAATGGCTTGCAGAAGTTCAATTTCTTGGAGTTGTTAGTCACC CGAACCTAGTGGAACTTCTAGGTTACTGCTCTGTTGATAGTGAAAGAGGGATCCAACGGCTTCTGGTTTATGAATATATGCCCAACAGAAGCTTAGAAGA TCATCTTTTCAAAAGAGGTCCACCCACTCTGTCATGGAGGAAAAGATTAGAGATAATCCTTGGTGCTGCTGAAGGATTGGCTTATTTGCATGGAGGAATG GAAGTCCAGGTTATTTATCGAGATTTTAAATCCTCGAATGTTCTTTTGGATGAGGACTTTAAACCGAAGCTCTCTGATTTCGGGCTTGCTAGAGAAGGAC CAACGGGTGATCGAACTCATGTATCCACTGCGGTGGTTGGTACATATGGATATGCTGCTCCCGAATATGTTGAAACAGGCCATCTCACCATTCACAGTGA TGTATGGAGCTTCGGCGTGGTTCTCTATGAAATCCTTACTGGCAGGCGAACGCTGGAAAGAAATCGCCCTGTAATAGAGCAGAAGCTTCTAGATTGGGTG AAACAATTTCCAGTTGACAGTAAAAGATTTAGCATGATAATTGATCCACGACTCATAAATGAGTACTCTTTCAATGCAGCAAAGCAAATTGCTAAGTTGG CAGATAGCTGCCTTAACAAGAACGCCAAAGAGCGACCGACAATGACTCAAGTGGTAGAGAGGTTGAAGCAAATAATACAAGATTTAGAAGGGGAGAACAC CTCTACAAATAGGAATGCTGAGTCGTCTCAATCTAGCTTGTCAAGGCGCAAACAGAACAAGGTCTAA
AA sequence Show only first row Show all	>Potri.001G149100.1 pacid=42792993 polypeptide=Potri.001G149100.1.p locus=Potri.001G149100 ID=Potri.001G149100.1.v4.1 annot-version=v4.1 MKCFYIFKDKFKNKKGQANSAPEPSDHQSKSNSSPRRTAKSLPSPRSIPELYKEKEHNLRVFSFQELKEATNGFNRLLKIGEGGFGSVYKGTVRPASGQG DPVVVAIKKLNNHGLQGHKQWLAEVQFLGVVSHPNLVELLGYCSVDSERGIQRLLVYEYMPNRSLEDHLFKRGPPTLSWRKRLEIILGAAEGLAYLHGGM EVQVIYRDFKSSNVLLDEDFKPKLSDFGLAREGPTGDRTHVSTAVVGTYGYAAPEYVETGHLTIHSDVWSFGVVLYEILTGRRTLERNRPVIEQKLLDWV KQFPVDSKRFSMIIDPRLINEYSFNAAKQIAKLADSCLNKNAKERPTMTQVVERLKQIIQDLEGENTSTNRNAESSQSSLSRRKQNKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47070			Protein kinase superfamily pro...		Potri.001G149100 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	10.81	0.8530
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	15.49	0.8529
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	16.70	0.8468
AT4G35840			RING/U-box superfamily protein...		Potri.005G244800 [exp]	18.49	0.8212
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	19.89	0.8138	Pt-FZF.1
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.013G040100 [exp]	20.07	0.8032
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	20.73	0.8387
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.005G103200 [exp]	23.23	0.8146
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	24.65	0.8448	EDS1.2
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003700 [exp]	29.08	0.8368

Compare expression of checked genes

Potri.001G149100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.