Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35190 389 / 5e-138 NSPN11, ATNPSN11, NPSN11 novel plant snare 11 (.1) AT3G17440 310 / 8e-107 ATNPSN13, NPSN13 novel plant snare 13 (.1.2) AT1G48240 305 / 7e-105 ATNPSN12 novel plant snare 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085200 [exp] 461 / 1e-166 AT2G35190 391 / 6e-139 novel plant snare 11 (.1) Potri.010G001900 [exp] 310 / 5e-107 AT3G17440 429 / 8e-154 novel plant snare 13 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003004 [exp] 380 / 2e-134 AT2G35190 366 / 5e-129 novel plant snare 11 (.1) Lus10017116 [exp] 302 / 2e-103 AT3G17440 410 / 6e-146 novel plant snare 13 (.1.2) Lus10018338 [exp] 293 / 5e-99 AT3G17440 375 / 2e-131 novel plant snare 13 (.1.2) Lus10011034 [exp] 289 / 5e-99 AT2G35190 274 / 2e-93 novel plant snare 11 (.1) Lus10000163 [exp] 66 / 5e-14 AT3G17440 103 / 3e-29 novel plant snare 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [poplar] [flax] Traffic PF03908 [poplar] [flax] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Potri.001G149200.1 pacid=42787768 polypeptide=Potri.001G149200.1.p locus=Potri.001G149200 ID=Potri.001G149200.1.v4.1 annot-version=v4.1 ATGGATCCTTTATCGTCCATCAGTGAAGAGCTAGCAGAGATCAATGGGCAGGTCGCCGATATTTTTCGAGCTTTATCAAAGGGATTCCAGAATTTGGAGA AGATTAAGGATGCCAATAGACAGAGTAGGCAGTTGGACGAACTTACGGGGAAGATGCGGGAGTGTAAGAGGCTTATCAAAGAGTTTGACAGAGAAGTGAA GGATATGGAGAGTAGAAATGATCCAGACACCAACAAAATGTTGAATGAGAAAAAGCAATCAATGGTCAAAGAGTTGAATTCATATGTTGCTCTTAAAAAG CAATACGCTACAAATCTTGAAAACAACAAGAGAGTTGATCTCTTTGATGGGCCTAATGAAGAGTTACATGACAACAATGTGCTGCTAGCTTCATCTATGA CAAACCAACAAATAATGGATCATGGAAATCAGATGATGGATGAGACTGATCAGGCAATTGAGAGGGGGAAAAAGGTTGTTCAAGACACCGTCAATGTTGG AAGGGAAACTGCAGAGGCTCTTAAGGCTCAGACTGAACAAATGAGTAGGATTGTTAATGAGCTCGACTCTATCCATTTCTCGATCAAGAAAGCTTCTAAA ATGGTGAAGGAAATTGGTAGGCAGGTTGCAACTGACAAGTGCATTATGGCATTACTCTTCCTTGTTGTTATTGGAGTCATAGCAATCATTATAGTGAAGC TGGTGAACCCAAACAACAAGGACATTCGGGATATTCCAGGTTTAGCCCCACCCGCACAGTCACGCAGATTGCTTTGGAATCCTAATTAA
AA sequence Show only first row Show all	>Potri.001G149200.1 pacid=42787768 polypeptide=Potri.001G149200.1.p locus=Potri.001G149200 ID=Potri.001G149200.1.v4.1 annot-version=v4.1 MDPLSSISEELAEINGQVADIFRALSKGFQNLEKIKDANRQSRQLDELTGKMRECKRLIKEFDREVKDMESRNDPDTNKMLNEKKQSMVKELNSYVALKK QYATNLENNKRVDLFDGPNEELHDNNVLLASSMTNQQIMDHGNQMMDETDQAIERGKKVVQDTVNVGRETAEALKAQTEQMSRIVNELDSIHFSIKKASK MVKEIGRQVATDKCIMALLFLVVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAQSRRLLWNPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	0	1
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	2.00	0.9549
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	3.46	0.9531	Pt-NPSN11.1
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.016G117200 [exp]	4.24	0.9300	CPK13.2
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	5.19	0.9503
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	6.32	0.9405
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	8.06	0.9435
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	8.77	0.9408
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	11.83	0.9461
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	13.96	0.9110	Pt-SEC5.2
AT1G53040			Protein of unknown function (D...		Potri.001G399800 [exp]	14.79	0.9067

Compare expression of checked genes

Potri.001G149200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.