Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47080 390 / 7e-138 CKB1 casein kinase II beta chain 1 (.1.2.3.4) AT4G17640 388 / 5e-137 CKB2 casein kinase II beta chain 2 (.1.2) AT2G44680 370 / 7e-130 CKB4 casein kinase II beta subunit 4 (.1.2) AT3G60250 343 / 2e-119 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G084900 [exp] 472 / 3e-170 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2) Potri.014G052100 [exp] 395 / 2e-139 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2) Potri.002G139900 [exp] 389 / 3e-137 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042859 [exp] 398 / 5e-141 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2) Lus10028160 [exp] 391 / 5e-138 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2) Lus10028159 [exp] 390 / 5e-138 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2) Lus10028161 [exp] 388 / 6e-137 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2) Lus10042861 [exp] 387 / 1e-136 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2) Lus10042860 [exp] 370 / 8e-131 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01214 [poplar] [flax] CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence Show only first row Show all	>Potri.001G149600.1 pacid=42793460 polypeptide=Potri.001G149600.1.p locus=Potri.001G149600 ID=Potri.001G149600.1.v4.1 annot-version=v4.1 ATGTACAGAGAGCGAGGGATTGGTGTGTCCAAGACGGACGTCGATCATCGAAAGCAGCGGATTAGCGATGTCCTCGATAAGCATCTCGACCGATCCTCTC CGTCCAGTTCCAGACCCACCAACGGCAAGGATTTGTTTCTTTTCATGAACAAGCAGCAACCGCCTGATCACAACAACATTGACCATCTCCTCTCTAAAGA CAACAACGCCTCCGTTGTGGAATCTGACACGGACAGCGAAGAGTCTGATGTTAGTGGTTCCGATGGAGATGAGACGTCGTGGATCTCATGGTTTTGCAGT CTAAGAGGGAATGAATTCTTTTGTGAAGTTGATGATGATTACATACAAGATGATTTTAACCTCTGTGGGTTAAGCAGTCAAGTTCCATACTACGATTATG CCCTTGATTTGATTTTGGATATTGAATCCTCTCATGGTGATATGTTCACAGAGGAACAGAATGAATTGGTTGAATCTGCAGCAGAGATGCTTTATGGATT GATTCATGCTCGATATATATTGACCAGCAAAGGGATGACAGCTATGCTGGAGAAGTACAAAAACTATGACTTTGGAAGATGCCCCAGAGTTTGCTGCTGT GGACAACCTTGCCTTCCAGTTGGTCAATCAGACATTCCTCGGTCAAGCACTGTTAAAATATGCTGCCCCAGATGTGATGATATATACTACCCACGTTCCA AGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACGACATTTCCTCACCTGTTTTTAATGACTCACGGGCATCTCAAGCCGCAAAAGGTAGTGCAGAC CTATGTTCCTAGAGTATTTGGGTTCAAGCTACACAAACCATAA
AA sequence Show only first row Show all	>Potri.001G149600.1 pacid=42793460 polypeptide=Potri.001G149600.1.p locus=Potri.001G149600 ID=Potri.001G149600.1.v4.1 annot-version=v4.1 MYRERGIGVSKTDVDHRKQRISDVLDKHLDRSSPSSSRPTNGKDLFLFMNKQQPPDHNNIDHLLSKDNNASVVESDTDSEESDVSGSDGDETSWISWFCS LRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHGDMFTEEQNELVESAAEMLYGLIHARYILTSKGMTAMLEKYKNYDFGRCPRVCCC GQPCLPVGQSDIPRSSTVKICCPRCDDIYYPRSKYQGNIDGAYFGTTFPHLFLMTHGHLKPQKVVQTYVPRVFGFKLHKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47080		CKB1	casein kinase II beta chain 1...		Potri.001G149600 [exp]	0	1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.008G135200 [exp]	6.63	0.8603	Pt-FKF1.2
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	9.00	0.8863
					Potri.015G140800 [exp]	9.69	0.8875
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	22.36	0.8225
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.010G143900 [exp]	29.34	0.8486
AT1G22540			Major facilitator superfamily ...		Potri.019G079600 [exp]	36.66	0.8497
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	48.74	0.8448
AT3G16510			Calcium-dependent lipid-bindin...		Potri.001G070400 [exp]	49.82	0.8412
AT1G04780			Ankyrin repeat family protein ...		Potri.001G051400 [exp]	62.48	0.8032
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231200 [exp]	71.83	0.8252

Compare expression of checked genes

Potri.001G149600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.