Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17620 613 / 0 glycine-rich protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035302 [exp] 728 / 0 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030023 [exp] 676 / 0 AT4G17620 571 / 0.0 glycine-rich protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [poplar] [flax] PDDEXK PF08652 [poplar] [flax] RAI1 RAI1 like PD-(D/E)XK nuclease
Representative CDS sequence Show only first row Show all	>Potri.001G149900.1 pacid=42791475 polypeptide=Potri.001G149900.1.p locus=Potri.001G149900 ID=Potri.001G149900.1.v4.1 annot-version=v4.1 ATGAATTTCGCAGAACAGGAAGTGGATTTATTTGGGGAAGAGGAGGATGACAATAATGGGGCTCGCCGATCGTCCCCTTCCTCCTCACAATCATCATCAT CATCGTCTTCCGGCTCGTCGTCGTCATCTTCGTCTGCCGCAGCTTCATCTTCTTCAGATGGCAGTGATGGCGAAGAGAGCGATGGAGGACGCGAAGGTGG GGGCGGTAAGAGCGGCAGCAGTGGAGGGGAAGAGGAGGGTGGTAGAGAAGTCGAAACTAATAATCAGTATTATAGTAATTATAATGATAGTAACCATGAG AGGGGCTCTGATGTGAATGAAGAAGAAGACGAAGAAGAAGAAGAAGAGAGAGATCTTTTTGGGTCTGATAATGAAGATTATGTTAAAACCACTGTTGTCA GTCCTCACCCAATTCCTGTGTTGCCTGCCATGCGCCATCCACACAATCCGGGTAGGGGGAACTTTGGACGTGGTCGTTGGCACAATAATAGAGGAGCAGG CCTCCTTCCCCGGCCAGGATTTCCACCCAGACAGGGCTATGGCTATGGTTCTAAATTTGCAAATGGTCATCGTGATGAAAGATTTGTTTCTGAACTGAAG TTTTCCAAGAGTGATGAAACATTATCGAGAAAATGTGTTGCCTTTCAGGAGCCATGCGAACTTGCTTGCTATAGTCGGATCGAGGGTGGAGAGGTCTACT TTGATGATCGCAGCTTGAGGCTTTTCAAGCGTCTTATTTCGGAAGATGTTGGAGCTGATCTGAACGAAGGCTTTGATACTTTCATTGAGAAAAGGGACTT GGGCTCCCAGGGATTTGGTGACCTTCTTGCATGCATAAGAGACAAAAACATTCCCCTTCAAAATATGCATTTTGTGACTTTCCGTAACAACCTTAACAAG ATACTCGCAACTGCTTATATGCGACATGAACATTGGGAAATGGGGGTGCACAAAAGGAATGGAGTTGTCTATCTTGATGTGCATAAACTACCAGAAAGAC CGCAAAGCGAGTTGGAGCGTAGAAGATGTTATTGGGGATATTGCTTTGAGAGCCTTGCCACTGAAGATCCAAGGAGAGCTAATGGAGAAGCGATACATCA TGTTGATTCCAACGTTGAATATTGTTCTGTGATTAAAACTAAATTAGGGGCTCATCGTATTCTGATGGGTGCTGAAATGGATTGCTGTGATTCAACTGAT AGCGGGAGGAGGTTTTATGTGGAGTTGAAGACTAACCGCGAGATAGATAATTATCATCAAGAGGAAAGATTCGAGAAAGAGAAACTGCTGAAGTGTTGGA TTCAAGCTTTTTTAGCTGGTGTTCCTTATATTGTTATTGGATATAGGGATGATGCAGGCCGACTTGTCCGCACGGAGAGATTAACAACCAAGGATATAAC ACAGAGAGTAAAAATGAAAAACTACTGGCAGGGAGGTGTGTGCCTAGCATTCGCTGATGAGGTATTATGCTGGCTTTATGGAACAGTCAAAGAAAACGAA GATTACATATTGCAGTTTGCTCCGCCTTTCACACGTTTAGAGCTTCTGCAAGCCCAATCTTGCCCTGAAGCGATCACCAGCCATGTTGAGCAAATGTAG
AA sequence Show only first row Show all	>Potri.001G149900.1 pacid=42791475 polypeptide=Potri.001G149900.1.p locus=Potri.001G149900 ID=Potri.001G149900.1.v4.1 annot-version=v4.1 MNFAEQEVDLFGEEEDDNNGARRSSPSSSQSSSSSSSGSSSSSSSAAASSSSDGSDGEESDGGREGGGGKSGSSGGEEEGGREVETNNQYYSNYNDSNHE RGSDVNEEEDEEEEEERDLFGSDNEDYVKTTVVSPHPIPVLPAMRHPHNPGRGNFGRGRWHNNRGAGLLPRPGFPPRQGYGYGSKFANGHRDERFVSELK FSKSDETLSRKCVAFQEPCELACYSRIEGGEVYFDDRSLRLFKRLISEDVGADLNEGFDTFIEKRDLGSQGFGDLLACIRDKNIPLQNMHFVTFRNNLNK ILATAYMRHEHWEMGVHKRNGVVYLDVHKLPERPQSELERRRCYWGYCFESLATEDPRRANGEAIHHVDSNVEYCSVIKTKLGAHRILMGAEMDCCDSTD SGRRFYVELKTNREIDNYHQEERFEKEKLLKCWIQAFLAGVPYIVIGYRDDAGRLVRTERLTTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENE DYILQFAPPFTRLELLQAQSCPEAITSHVEQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17620			glycine-rich protein (.1.2.3)		Potri.001G149900 [exp]	0	1
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Potri.002G081200 [exp]	17.88	0.7811
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.006G022300 [exp]	19.07	0.7585
AT3G14190			unknown protein		Potri.009G072000 [exp]	22.04	0.7198
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	28.03	0.7647
AT3G22540			Protein of unknown function (D...		Potri.008G154500 [exp]	47.49	0.7177
AT4G32490		AtENODL4	early nodulin-like protein 4 (...		Potri.017G011200 [exp]	216.57	0.7185

Compare expression of checked genes

Potri.001G149900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.