Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04560 557 / 1e-170 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT2G36490 546 / 3e-169 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 525 / 7e-162 DML2 demeter-like 2 (.1) AT4G34060 463 / 6e-142 DML3 demeter-like protein 3 (.1.2) AT3G47830 73 / 2e-13 DNA glycosylase superfamily protein (.1) AT4G04957 56 / 3e-09 Domain of unknown function (DUF1985) (.1) AT2G31450 45 / 0.0005 ATNTH1 DNA glycosylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234400 [exp] 578 / 4e-177 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 569 / 9e-174 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.006G116000 [exp] 553 / 1e-168 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.015G071300 [exp] 73 / 2e-13 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027713 [exp] 541 / 2e-165 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 542 / 2e-162 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10023864 [exp] 288 / 9e-79 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10014367 [exp] 273 / 6e-74 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10034120 [exp] 71 / 2e-12 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 51 / 9e-06 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15628 [poplar] [flax] RRM_DME RRM in Demeter PF15629 [poplar] [flax] Perm-CXXC Permuted single zf-CXXC unit
Representative CDS sequence Show only first row Show all	>Potri.001G150001.7 pacid=42791286 polypeptide=Potri.001G150001.7.p locus=Potri.001G150001 ID=Potri.001G150001.7.v4.1 annot-version=v4.1 ATGGAGAAAAGGGAGCCTGCTATACAGAATGTTGGTGCTCCAGTAACTCCAGAAAAGCCCCCGCCTCTGTCAGCAAGGCCACGACCGGTCTATGTTAAAA GGTTCTCGGAACGTGGTTCACAAAGTTTTCTGGGAAGAATCGCAGCAGAAGAGGCTCGAGACCCCATTTGTGCAATTATTACTGCCGCGGCTTCCACAAG CAAGAATGAACATCCCAACAATTGCAAGTATTTGGAAACTGGTGCTGTTTTTCAGATAGATTTGAAAGAAAGCATCTATGACTGGAACGGTAATTCTACC GCTTCTGTTCATGGTACTCAAATCTTCGGAGACTCAGGAGGTCTGTCCGAAGAGGGTTTTCAATCTGAAAACCATAATCTTTTGTCTATTCCAGACCTGG AGGAGAGTGATAGATACAGAGAAAAATGTTGTGTGCTTCCTTATGGTAAAGAACAAGATACAGAACATGGTACAATCTCTCGTATGAATTATGAGATGCT TGATCATATTGGGTGCTCAAATCCAGTTGAGCAAGTTGCGATTTCGACTCCATTGCCAAAGAAAAGTGGCAGCAAAAGACCAAGAAATGGCATGGATCAG AACAAAAGGCCAGTGAAGAAACCCAAGAGGAAGAAACATAGAACGAAAGTAGCTGTTGAAGGTAAACCAAAACGAACTCCTAAAAAGATGTCAAAGCTTG CAACTCCGAAATGTATGCAAGAGACAAAGGAGAAGAGGAAGTGTGTTGAGAAAGCTCCTCCTCCTCTCAGAAATAGCCAAGAGAGTTCAGTGAGAGAGCA TCATAAAGAAGTTGCTGAAATTCCAAAGATGGAAAATCTGCCAGTTGATGACAACAAGATGGCTATGGTTAGCAATGTCAACCATGATTTGAAAGATGAC AATAAAGATTCGACTATGCAGCCTGGCATGGATAACGATAGTGGATCAATGGTTTTGTTGAGTGATGATAAATTGGGGTTCAAGTCAAATGAGAATGAAC TAAGATGGAACGTTCGTGAAATGAGGTCTGCAGGAAAATTTTGGCCGAAACCTGGGTGTCAATATAATTCATTACAGGCTTATAGAAGGGTATTTAGAGT AGACTCCTGTGTCGGCAATAGCAGAGAGGTTGGGCCTAATGTTCCTAAAAGATGCATGAAAAAAATGATCAAGAGGGGGCGTAAATTGAACCTGTTCAGC TCTTTGTGGTCGTCTCACTTTAGTTGCCATGAAAGAAAGAAGAGATCTAAGGTGTTTACTCCAAGAGTCGATCCCACTTCTCTCAATGCAAGATTCGCAG AGAAAGGGAAGGATTTAGAAACAGCTCCTCGGGATCATATACCCATTCCTGGAGAACAAGAGTTTCAAATAACCGACAAACTAAATGGAGAAAACCGCGA AACTCTAGCAGAGGGATGCGTTGAGGAAGGGCTTTCTCTTAAACAAGCTCTAACCAATGAAGTTAATGGAGTTCAAATAGTCTGTGAGGCTAAAGCACCA AGCTACTCTGAGATGAGACCCTCTGCTGCAAAATCAAAGTTTGAAGATGGCAAAAGCAAACAACAGTCGCGGAAAAAGAAGATCCGAATCACCGACAAAT CAATAAAACCTGGACCGAAACTTTTCGATGACGAAAGTGGGATTCTTCTTAAGACAGTTAAGCATGCTGTAATGGATAAACTTGGTGATCTACTACGGAA TTCAAGCATCAATGACAATAAGAGTGAAAAAAGGGGTCCTGGCAGACCAAAAAGTAAACCGGAACATGTAGTTGACGGACAGAATGCTTTAATTCCCTAT TGGGGTCGTGGAAGAGCAAGACATGAAGTTGATCTAGATCCAGAGTCATTGAGAAGGTGGAACCAACTAATGAAAATAGATAGTGGAGAGGGTGAAGAAG AGGATGGAAAAAGGAAAGAATGGTGGCAAAGAGAAAAAATAACTTTCAATGGACGAATAGATGCGTTTACTTCTCGGTCGCATCAGTTTCTAGGTGATAG GAGATTCAGACAGTGGAAAGGTTCTGTTGTGGACTCAGTGGTAGGAGTTTTCCTAACCCAAAATGTGTCAGACCACCTATCAAGTGCTGCATACATGTCA CTTGTTGAAAATTTTCCAGTTCAGTCAACGAGTAATCAACAAGCGTCAATGACCATAGATGGCCAAAAACCAATTGAGAGCAGCATGACATCCATTGGAG CAACTTATGATGCAGATGGAAACCGATATTTTGTCACAGAAGTACCTGAACCAGATATGAATCATGGGTCCAAAAATTTACCAGCCGAAAAGGCTACATG CTTGCTTCAAGAAGAGGTACAAAGACGGAATGGTATTGTGAGATCAGAACCTGAACCGGATATGAATCAAGGACACAAAGATTTGCCGGCCGAAAAGGAT ACGTGCTTGCTTCAAGAAGACGAGCAAGGACAGAATAGTGTTGTGAGATCAGAATCTGAACCAGATATGAATCATGGACCCAAAGATTTACCCGCCGAAA GGGCTATATGCTTGCTCCAGGAAGAGGTGCATAGACAGAATGGTATTGTGAGATCAGAACCTGAACCAGATATGAATCTTGTGTCTCAATATTTACTAGT TGAAAATCCTATGTGCTTGCCTCGTGAAGTGGTGCGAAGACAGCCTCAAAATTTACCAACCGAACAGCCTATATGTTTGCCTCATGAAGTGGTGAAAAGA CAGAGCGGGAATGAAACTGAAAAGAAAAACAGAAGCCCGAATAGGAAAACAGCTTTTAAGGAGACTAAAAAGACAATTCCGAGAGGGAAGAATAAAATTG TTAAAGATGTGGTACTTAGAAGGAGGAACTGGGAGAGTTTAGGAAAGATCTATTCTAGACCAAGAAGCAAGGATCAGATGGATTCGGTGGATTGGGAGGC AGTAAGACAAGCAGAAACCAGCAAAGTTGCCAGCATCATCGAAGGACGTGGTCAGCAAACTATTATTGCGGGAAGAATCAAGCAATTTCTGGATCGAGTT GTTGACATGCATAAAAGCATAGATCTCGAATGGTTACGATATGCTCCACCTGATGATGTGAAGGATTACCTGTTGGAGTTCATGGGATTGGGCTTGAAAA GCGTGGAATGTGTACGACTTTTGTCTCTTCAACAGGTTGCCTTTCCGGTTGATGTAAATGTTGCTCGGATAGCGGTTCGTTTAGGATGGGTTCCCCTGAA AGCACTCCCTGGAAGCCTTCAGTTCCACCTTATAGAAGAGTTTCCGATATTGGACACCATTCAGAAATACCTCTGGCCCCGACTATGCGAGCTTGACCAT AGAACACTCTATGAACTGCACTATCACATGATAACCTTTGGAAAGGTATTCTGCACAAAGGAAAACCCAAGGTGCCATGCTTGTCCAATGAAAGCAGAAT GCAGACATTATGCAAGTGCACAATCAAGTGCTGCCAATCTTTCCCTACCAGGACCGTCAAAGAAAAGTGTGGACCAATCAATTGTTACCAGCAAGCCTAG TAGAAATTCTAGTTCACTTGGAAACAATTGTGATGTCAAAAATCCAATGTCAGTTACCCTTTTAGATGCCAACAGAACTACAGAATCTCGTCGAGATGTT CACACTTGCAAACCCATAGTTGAAGAGCCAAAATCACCACAACAAGAAGAGGACATTGAAGATTTTTCATGGGATGGATGTATTGAAGATGAAGAGATCC CCACTATCAAACTCAATCGTGAAGAGTTCAACCCAGATGGGAAAAAGTCTCCATACAGCAATTCTATGTCGCAAGCTTTAGTTTCTGTGGGGACTACTCC ATTGTCAGCACCTAAAATGAAGCGTGTGACCTCTTTGCGGACTGAACATCAAGTGTATGAACTTCCAGATAATCATGAGATTTTGGTTGGGCTAGACAAA CGAGAAAGGGATGATTCAGTACCTTACCTTCTCGCTATATGGCAACCAGGTGAAACTCCGAATTCAAGCCAGCAACCAGAGAAATTATGCAGCTCGCAGG GATCACAACTCTGTGATCAGAAAACATGTTTTGCTTGTGAAGGTATTCGAGAACAACAAGCTGGTATAGTTCGTGGAACAATTTTGATACCATGCAGGAC AGCTCTGAAGGGAAGCTTTCCACTCAATGGCACATATTTTCAAGTTAATGAGGTATTTGCTGATCACAAATCTAGTTATGACCCCATTATTGTTCCCAGA GAATTGCTATGGAACCTCGTAAAGAGGACTTTATATGTTGGGTCATCAACAAAATCAATATTTAGAGATTTGTCATTAAAGGAGATTCACCAAAACTTTT GGACAGGTTTTACTTGTGTGAAAGCATTCGAGCGAGGAACAGGTGCTCCAAAACCTCTTGCAAGGAGATTCCACTGTTCAGCAAGCAAGATGGAGAAGGA AGGAAGGAAAAAATCAGAGAAAAAATCATTTCACAGCCAGATGACCATCTTATTCAAGCCTCCAAACTTCTATGAATGCCAGTTGGGTTTGTAG
AA sequence Show only first row Show all	>Potri.001G150001.7 pacid=42791286 polypeptide=Potri.001G150001.7.p locus=Potri.001G150001 ID=Potri.001G150001.7.v4.1 annot-version=v4.1 MEKREPAIQNVGAPVTPEKPPPLSARPRPVYVKRFSERGSQSFLGRIAAEEARDPICAIITAAASTSKNEHPNNCKYLETGAVFQIDLKESIYDWNGNST ASVHGTQIFGDSGGLSEEGFQSENHNLLSIPDLEESDRYREKCCVLPYGKEQDTEHGTISRMNYEMLDHIGCSNPVEQVAISTPLPKKSGSKRPRNGMDQ NKRPVKKPKRKKHRTKVAVEGKPKRTPKKMSKLATPKCMQETKEKRKCVEKAPPPLRNSQESSVREHHKEVAEIPKMENLPVDDNKMAMVSNVNHDLKDD NKDSTMQPGMDNDSGSMVLLSDDKLGFKSNENELRWNVREMRSAGKFWPKPGCQYNSLQAYRRVFRVDSCVGNSREVGPNVPKRCMKKMIKRGRKLNLFS SLWSSHFSCHERKKRSKVFTPRVDPTSLNARFAEKGKDLETAPRDHIPIPGEQEFQITDKLNGENRETLAEGCVEEGLSLKQALTNEVNGVQIVCEAKAP SYSEMRPSAAKSKFEDGKSKQQSRKKKIRITDKSIKPGPKLFDDESGILLKTVKHAVMDKLGDLLRNSSINDNKSEKRGPGRPKSKPEHVVDGQNALIPY WGRGRARHEVDLDPESLRRWNQLMKIDSGEGEEEDGKRKEWWQREKITFNGRIDAFTSRSHQFLGDRRFRQWKGSVVDSVVGVFLTQNVSDHLSSAAYMS LVENFPVQSTSNQQASMTIDGQKPIESSMTSIGATYDADGNRYFVTEVPEPDMNHGSKNLPAEKATCLLQEEVQRRNGIVRSEPEPDMNQGHKDLPAEKD TCLLQEDEQGQNSVVRSESEPDMNHGPKDLPAERAICLLQEEVHRQNGIVRSEPEPDMNLVSQYLLVENPMCLPREVVRRQPQNLPTEQPICLPHEVVKR QSGNETEKKNRSPNRKTAFKETKKTIPRGKNKIVKDVVLRRRNWESLGKIYSRPRSKDQMDSVDWEAVRQAETSKVASIIEGRGQQTIIAGRIKQFLDRV VDMHKSIDLEWLRYAPPDDVKDYLLEFMGLGLKSVECVRLLSLQQVAFPVDVNVARIAVRLGWVPLKALPGSLQFHLIEEFPILDTIQKYLWPRLCELDH RTLYELHYHMITFGKVFCTKENPRCHACPMKAECRHYASAQSSAANLSLPGPSKKSVDQSIVTSKPSRNSSSLGNNCDVKNPMSVTLLDANRTTESRRDV HTCKPIVEEPKSPQQEEDIEDFSWDGCIEDEEIPTIKLNREEFNPDGKKSPYSNSMSQALVSVGTTPLSAPKMKRVTSLRTEHQVYELPDNHEILVGLDK RERDDSVPYLLAIWQPGETPNSSQQPEKLCSSQGSQLCDQKTCFACEGIREQQAGIVRGTILIPCRTALKGSFPLNGTYFQVNEVFADHKSSYDPIIVPR ELLWNLVKRTLYVGSSTKSIFRDLSLKEIHQNFWTGFTCVKAFERGTGAPKPLARRFHCSASKMEKEGRKKSEKKSFHSQMTILFKPPNFYECQLGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.001G150001 [exp]	0	1
AT2G45610			alpha/beta-Hydrolases superfam...		Potri.002G150900 [exp]	6.63	0.6287
AT3G04900			Heavy metal transport/detoxifi...		Potri.009G126600 [exp]	16.61	0.5499
AT2G24670	B3		Domain of unknown function (DU...		Potri.013G065401 [exp]	57.13	0.5411
AT1G04360			RING/U-box superfamily protein...		Potri.001G235100 [exp]	97.21	0.5500
AT3G24850	B3		Domain of unknown function (DU...		Potri.015G014700 [exp]	101.46	0.5556
AT4G38140			RING/U-box superfamily protein...		Potri.004G209600 [exp]	125.13	0.5212

Compare expression of checked genes

Potri.001G150001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.