Plant FIBer expression Database

Potri.001G150300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17070 474 / 3e-169 peptidyl-prolyl cis-trans isomerases (.1)
AT4G33380 52 / 3e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G083900
[exp]
630 / 0 AT4G17070 484 / 3e-173 peptidyl-prolyl cis-trans isomerases (.1)
Potri.014G051300
[exp]
461 / 3e-164 AT4G17070 436 / 4e-154 peptidyl-prolyl cis-trans isomerases (.1)
Potri.002G139600
[exp]
428 / 2e-151 AT4G17070 405 / 3e-142 peptidyl-prolyl cis-trans isomerases (.1)
Potri.002G127700
[exp]
51 / 5e-07 AT4G33380 300 / 8e-101 unknown protein
Potri.014G031900
[exp]
47 / 8e-06 AT4G33380 331 / 3e-113 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037182
[exp]
348 / 6e-121 AT4G17070 306 / 3e-104 peptidyl-prolyl cis-trans isomerases (.1)
Lus10036745
[exp]
342 / 3e-119 AT4G17070 298 / 6e-102 peptidyl-prolyl cis-trans isomerases (.1)
Lus10009765
[exp]
47 / 1e-05 AT4G33380 392 / 2e-137 unknown protein
Lus10006482
[exp]
44 / 0.0001 AT4G33380 194 / 9e-60 unknown protein
Lus10009237
[exp]
42 / 0.0004 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0475 Cyclophil-like PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence
>Potri.001G150300.1 pacid=42792686 polypeptide=Potri.001G150300.1.p locus=Potri.001G150300 ID=Potri.001G150300.1.v4.1 annot-version=v4.1
ATGGGTCGCCGCCAAAACGACTCTGAACCATCCCGTTTCATCTCTCTCACCTTCCTCTTGGCGGGTTTTATTTCTTGTGCTTTAGTCTACACTGTTCTCT
CCGTAGCTCTCAATTCTAATACAAATTCTAAAGGTTCAAATTTTGAGCCTTTGACATTGGCAGAGGAGAGTAATGATGGTGGGTGTTGTAGAGGGGTTGA
GAAGTTGGAGCTTTGGGGAGGTGCAGTGAAGTGGGGGTCAGATCATAAGTTCAATTCTTCTAAGGAGTGTTGTCAGGCTTGTAAGGCTATGTGCACGGGC
ATTGATGGGCCTTGCTTGTGTGATACTTGGGTGTTTTGTGGCAATAAAAAGGCTTGCGGGTCTAAATTTGGGGAGTGTTGGCTGAAGAAACAAAAGGATA
TATATGCCCCTGATCGACAGGAAGCAGGGGACCGTGTTATTTGGACTTCTGGGCTTATCTTTGGAAAAGGAGAGGGCATTGTTGGCCTGGAAACAGAATA
TGGCACTCTTCATATAAAACTCTTCCCAGACTGTGCTCCCCATTCTGTAGCCTACATTCTTGAGCTGCTCACACTACGTCATTGTGCTGGTTGCCAATTT
TATCGTGCAGAGGGCCGAGGTCAATTGTGGGATTCAGAAGGAAATCACATAAAAAAGGCTCCTTTTGGGCCTCCTTTTGCAATAATTCAAGGGACATTAG
AAGCTCAAGGAACAACATTCAAGAAAATTCCAACTGAAGAGTGCCCATACATAAGAAGGGGTTCAGTGGCCTGGGTTGGCTCTGGTCCAGAATTCTTCAT
TAGCCTAGCCGATCACCAAGAATGGAAGAAAGCATACACTGTCTTCGGTTCTGTTCTTCCAGAAGACATGGAAATTGCAGAGAAAATTGCGCAGCTCCCC
ACCAAATCGGATGTATGGAACAATATTAACGTGTCTGTCTTGGAAAAGCCAGTTCCCTTGTTGGTGCGAAGACTCGACGGGTGGGGAAATCTTAACACAA
ATGTGAAATCAGATTAA
AA sequence
>Potri.001G150300.1 pacid=42792686 polypeptide=Potri.001G150300.1.p locus=Potri.001G150300 ID=Potri.001G150300.1.v4.1 annot-version=v4.1
MGRRQNDSEPSRFISLTFLLAGFISCALVYTVLSVALNSNTNSKGSNFEPLTLAEESNDGGCCRGVEKLELWGGAVKWGSDHKFNSSKECCQACKAMCTG
IDGPCLCDTWVFCGNKKACGSKFGECWLKKQKDIYAPDRQEAGDRVIWTSGLIFGKGEGIVGLETEYGTLHIKLFPDCAPHSVAYILELLTLRHCAGCQF
YRAEGRGQLWDSEGNHIKKAPFGPPFAIIQGTLEAQGTTFKKIPTEECPYIRRGSVAWVGSGPEFFISLADHQEWKKAYTVFGSVLPEDMEIAEKIAQLP
TKSDVWNNINVSVLEKPVPLLVRRLDGWGNLNTNVKSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17070 peptidyl-prolyl cis-trans isom... Potri.001G150300
[exp]
0 1
AT4G28990 RNA-binding protein-related (.... Potri.006G160500
[exp]
4.47 0.6873
AT5G23370 GRAM domain-containing protein... Potri.004G068100
[exp]
5.56 0.7196
AT5G11000 Plant protein of unknown funct... Potri.018G021800
[exp]
6.00 0.6546
AT3G17380 TRAF-like family protein (.1) Potri.014G055400
[exp]
6.48 0.7018
AT3G54840 ARA6, AtRABF1, ... Ras-related small GTP-binding ... Potri.010G226300
[exp]
8.00 0.6210 ARA6.1
ATMG00810 ATMG00810.1, OR... DNA/RNA polymerases superfamil... Potri.006G163301
[exp]
10.86 0.5934
AT3G01280 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE D... Potri.012G070300
[exp]
10.90 0.6396
AT5G66270 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G115901
[exp]
10.95 0.6502
AT5G11000 Plant protein of unknown funct... Potri.006G261300
[exp]
13.60 0.6126
AT1G11330 S-locus lectin protein kinase ... Potri.011G039100
[exp]
16.91 0.6489

Potri.001G150300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.