Plant FIBer expression Database

Potri.001G150400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41150 1188 / 0 ATRAD1, UVH1 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011024
[exp]
1211 / 0 AT5G41150 1233 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2)
Lus10000998
[exp]
925 / 0 AT5G41150 916 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF02732 ERCC4 ERCC4 domain
Representative CDS sequence
>Potri.001G150400.1 pacid=42791481 polypeptide=Potri.001G150400.1.p locus=Potri.001G150400 ID=Potri.001G150400.1.v4.1 annot-version=v4.1
ATGGTCCAATTCCACGAACACATAATAACAGACCTCTTAGAAGACCCCGCCGGCGGGCTCGTAATCCTTTCATCTGGTCTATCCCTCCCAAAACTCGTCT
CCTCCCTCCTCTCCCTCCACTCCCCTTCTCAAGGCACGCTTTTAATCTTCTCCCCTCCTCCCACCCTTAAATCCCTAATTCTCCACCACCACAACACAAA
CCCAAACCCCATCGAAATCACCGCCGATCTCCCCTCTCACCACCGCCTCTCCCTCTACTCCTCCGGCCAAATATGCTTCATCACTCCCCGTATCCTCATC
GTCGACCTCCTCTCCAATAAAATCCCAACCTCCTCTCTCGCCGGGTTAATCATCCTCAACGCTCACTCCATCTCAGAAACCTCCACCGAAGCATTCATAG
TTAGAATTTTAAAATCCTCTACTCAGAATAGAAATCAGAATAATAGTAATGTGTTTTATATCCGCGCATTTAGTGATAGGCCACAGGCGATGGTGTCTGG
TTTTTGTAAGACGGAGAGGTTAATGAAGTGTTTGTTCATAAGAAGATTGCATCTTTGGCCGAGGTTTCAGGTTTATGTGTCGCAGGAATTGGAGAAGGAT
CCGCCGGAGGTTGTGGATGTGAGGGTTCCGATGAGTAAGTACATGGTGGGGATACAGAAGGCGATTTTGGAAGTTATGGATGCTTGTTTGAAAGAAGTGA
GAAAGAGTAATAAGGTTGACGTAGAAGATTTGACTGTTGAGAATGGGCTGTTCAAGTCTTTTGATGAGATCGTGAGGAGACAGTTGGATCCTATTTGGCA
TACCTTGGGGAAGAAAACTAAACAGCTCGTTTCGGATTTGAAGACATTGAGGAAGTTGCTGGATTACCTTGTTAGGTATGATGCAGTAAGTTATTTGAAG
TACTTGGATACGCTTAGGGTGTCACAGAGTTTTCAGTCTGTTTGGATATTTGCAGAACCCAGCTATAAGATATTTGATTATGCAAAGAAGCGTGTATTCC
GTTTGACAAGATCAAGTGATGTGAAATTAAATGAGCAGAGTAAGAACAAAGTAGGAAAAAAGAGAAAATTAAAGGGTGATGACAGTAACGAGGGAGAAGC
TGATGGTACTTCGTCCTCAACTACAAGTAGTGGGGTTGTGTTGGAGGAAGTTCTGGAGGAGGCACCAAAATGGAAGGTGTTACGTGAGATACTTGAAGAG
ATAGGGGAAGAAAGACAAAGGGTTGAAAGTGGAGAAGAAGATCAGGTTGAAAGTGAAGGTGTTGATAATGGCATTGTTCTGGTGGCATGCAAAGATGAAT
GCTCATGCATGCAGCTTGAAGATTGCATCATGCACAGCCCTCGAAAGGTGTTGCAAGAAGAATGGAAGAAGTACTTGTTGAGCAAAGTTGAGCTAGGTGG
CTTGCCAGCACCTGAGAAAAAGAAAGCAAAACTAAAGCCAAAGGAGCCCAAAGGATTTGGAATTCTTGACGGAGTTGTTCCTGTAACGACTGTGCAAAGT
GCGGAAGCTAGCAGCACAAACAAGCAGGAACATGATGTTTTGTTGGTTGCAGCATCAAAAATAAGAAATCAGTATAAAAGGGGACTGGTTGTTGAAGATG
AACTGCAGCCTCTTGCTGACAGCAGCAAGAAAGGTGCAAAAGAAAAGGGAAAAGAACACAAGAAAAGAGGCCAAGCAACTGGTCAGGATTCTGGAAGCAA
AGACAATGACAGCAATATTGATACGGTGATAAAAGATTTGCCAGAAATATCTGGTTCAAAAAACAAAAGCCAGACAGTTGAAAATGATCAAGCTGCCATA
GATGGTTATTATGAAGCGAATTTGCAGCGGGCATCTGTCAACAAAGGGGCTCTTCAGAGACATGCTGAAGAGCTAGGCCTTACAGGATCTCGAAATGCCA
AGCCAATACCACCGGTGCACTTTCATGCTCTGGAAAGTGATCAGCCTATACTTGACATCTTAAAGCCTTCTGTAGTTATTGTTTATCATCCAGACATGAT
GTTTGTCCGGGAAATTGAAGTCTACAAAGCTGAAAATCCCTCAAAAAAGTTGAAGGTGTATTTTATTTTCTATGAGGATTCTACTGAGGTCCAAAAGTTT
GAGGCTAGTATTCGCAGGGAGAATGGAGCATTTGAATCTTTGATCAGGCAGAAATCGCTGATGATGATTCCAGTTGATCAGAATGGACATTGCTTAGGAT
TGAATGTTTCCATAGAGCCACTAGGTTCAAGTTACCAAAACTCAACCAGAAGGGCTGGTGGGAGAAAGGAAATTGAGAAAGAAATGCAGGTCATTGTAGA
CATGAGGGAGTTCATGAGTAGCCTCCCAAATGTTCTCCACCAGAAAGGAATGAGCATAATACCAGTTACATTGGAAGTTGGGGATTATATTCTCTCACCG
TCAATATGTGTAGAGAGGAAGAGTATCCAAGATCTTTATATGAGCTTTACATCAGGCCGGCTTTACAACCAAGTGGAAACAATGGTGCGCTATTATCGAT
TACCTGTCCTTCTGATTGAGTTTTCACAAGATAAAAGCTTTTCATTTCAGTCTGCAAGTGATATTGGTGATGATGTCACACCAAATAGTATTATATCCAA
GCTGTCATTGCTTGCTCTACATTTTCCCCGCCTGCGAATCATCTGGTCACGCAGTTTACATGCTACAGCTGAAATATTTGCTTCGCTGAAGGCAAATCAG
GATGAACCTGATGAGATGAAGGCAGTTAGAGTTGGTGTCCCGTCGGAGGATGGTATTGTGGAAAATGATGTTAGAGCGGAGAACTACAATACATCTGCTG
TGGAGTTTCTGAGACGGCTCCCGGGGGTCACAGATTCAAACTACAGGGCTATAATGGATGGATGTAAGAGCTTAGCAGAACTCACACTTCTTCCTGTAGA
GAAGCTAGCTGAACTAATGGGTGGCCAGAAGGCTGCCAGGACTCTCAGAGACTTCCTTTACGCAAAGTACCCGACCTTGTTATAA
AA sequence
>Potri.001G150400.1 pacid=42791481 polypeptide=Potri.001G150400.1.p locus=Potri.001G150400 ID=Potri.001G150400.1.v4.1 annot-version=v4.1
MVQFHEHIITDLLEDPAGGLVILSSGLSLPKLVSSLLSLHSPSQGTLLIFSPPPTLKSLILHHHNTNPNPIEITADLPSHHRLSLYSSGQICFITPRILI
VDLLSNKIPTSSLAGLIILNAHSISETSTEAFIVRILKSSTQNRNQNNSNVFYIRAFSDRPQAMVSGFCKTERLMKCLFIRRLHLWPRFQVYVSQELEKD
PPEVVDVRVPMSKYMVGIQKAILEVMDACLKEVRKSNKVDVEDLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVSYLK
YLDTLRVSQSFQSVWIFAEPSYKIFDYAKKRVFRLTRSSDVKLNEQSKNKVGKKRKLKGDDSNEGEADGTSSSTTSSGVVLEEVLEEAPKWKVLREILEE
IGEERQRVESGEEDQVESEGVDNGIVLVACKDECSCMQLEDCIMHSPRKVLQEEWKKYLLSKVELGGLPAPEKKKAKLKPKEPKGFGILDGVVPVTTVQS
AEASSTNKQEHDVLLVAASKIRNQYKRGLVVEDELQPLADSSKKGAKEKGKEHKKRGQATGQDSGSKDNDSNIDTVIKDLPEISGSKNKSQTVENDQAAI
DGYYEANLQRASVNKGALQRHAEELGLTGSRNAKPIPPVHFHALESDQPILDILKPSVVIVYHPDMMFVREIEVYKAENPSKKLKVYFIFYEDSTEVQKF
EASIRRENGAFESLIRQKSLMMIPVDQNGHCLGLNVSIEPLGSSYQNSTRRAGGRKEIEKEMQVIVDMREFMSSLPNVLHQKGMSIIPVTLEVGDYILSP
SICVERKSIQDLYMSFTSGRLYNQVETMVRYYRLPVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQ
DEPDEMKAVRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCKSLAELTLLPVEKLAELMGGQKAARTLRDFLYAKYPTLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41150 ATRAD1, UVH1 ULTRAVIOLET HYPERSENSITIVE 1, ... Potri.001G150400
[exp]
0 1
AT1G08620 PKDM7D Transcription factor jumonji (... Potri.019G018700
[exp]
1.41 0.9059
AT4G27220 NB-ARC domain-containing disea... Potri.011G124000
[exp]
2.64 0.8971
AT2G17930 Phosphatidylinositol 3- and 4-... Potri.007G057900
[exp]
4.24 0.9018
AT3G06010 ATCHR12 Homeotic gene regulator (.1) Potri.008G149900
[exp]
4.58 0.8999
AT1G15130 Endosomal targeting BRO1-like ... Potri.008G126900
[exp]
5.29 0.8893
AT1G17070 GC-rich sequence DNA-binding f... Potri.019G043200
[exp]
6.63 0.8993
AT2G36480 ENTH/VHS family protein (.1.2.... Potri.006G115600
[exp]
8.06 0.8978
AT1G80000 CASC3/Barentsz eIF4AIII bindin... Potri.001G178900
[exp]
8.48 0.8961
AT4G20090 EMB1025 embryo defective 1025, Pentatr... Potri.003G154800
[exp]
8.83 0.8893
AT1G69060 Chaperone DnaJ-domain superfam... Potri.010G139100
[exp]
8.94 0.8840

Potri.001G150400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.