Plant FIBer expression Database

Potri.001G150800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17050 259 / 6e-87 UGLYAH ureidoglycine aminohydrolase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G083600
[exp]
298 / 2e-102 AT4G17050 469 / 2e-168 ureidoglycine aminohydrolase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040144
[exp]
251 / 1e-82 AT4G17050 422 / 7e-149 ureidoglycine aminohydrolase (.1)
PFAM info
Representative CDS sequence
>Potri.001G150800.3 pacid=42790159 polypeptide=Potri.001G150800.3.p locus=Potri.001G150800 ID=Potri.001G150800.3.v4.1 annot-version=v4.1
ATGCAAACTCCAACGCTACCGTCTCTCCTCCTCCTCCTACTCTCTCTATCATCAATTACAGCTGCTTTGAGTGACGATGGAGGATTCTGCTCTGCTCCTC
CTTCACCTTTTGAAACCGAAACGGCCTCCTCCAAACCTCTCTATTGGAGAGTTACTAATCCAACACTCTCTCCTTCTCACCTTCAAGACTTGCCAGGTTT
CACACGCAGTGTTTATGAAAGAGACCACGCTTTAATAACACCAGAAAGTCATGTATTCAGTCCTTTACCAGAATGGACAAATACATTGGGGGCATATCTA
ATGACGCCAGCTATGGGTTCCCACTTTGTGATGTACCTCGCAAAGATGCAAGAAAATTCAAGGTCTGGGCTCCCTCCAAATGATGTAGAGAGGTTCTTGT
TCGTGGTTCAGGGTTCTGCAACTCTGAGTAATGCATATGGTGCCCACCACCAAATGACGGCAATGGATTCATACGCTTATCTACCACCAAATTTTGAACA
TTCTCTGGAGTGTGGTGCATCTGCTACTCTTGCTGTCTTTGAACACAGGTATGATTCTCTAGAAAGTCATGTTACTGAGCAAATTGTTGGTTCAACAGAC
CAGCAGCAGGCGAGGTTTTTGAACTTAGAAAGCTTCTGCCTCCATCATTGCAATATGACTTCAATATCCATATAA
AA sequence
>Potri.001G150800.3 pacid=42790159 polypeptide=Potri.001G150800.3.p locus=Potri.001G150800 ID=Potri.001G150800.3.v4.1 annot-version=v4.1
MQTPTLPSLLLLLLSLSSITAALSDDGGFCSAPPSPFETETASSKPLYWRVTNPTLSPSHLQDLPGFTRSVYERDHALITPESHVFSPLPEWTNTLGAYL
MTPAMGSHFVMYLAKMQENSRSGLPPNDVERFLFVVQGSATLSNAYGAHHQMTAMDSYAYLPPNFEHSLECGASATLAVFEHRYDSLESHVTEQIVGSTD
QQQARFLNLESFCLHHCNMTSISI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17050 UGLYAH ureidoglycine aminohydrolase (... Potri.001G150800
[exp]
0 1
AT3G27930 unknown protein Potri.001G348700
[exp]
1.41 0.9171
AT5G09790 PDE336, SDG15, ... SETDOMAIN GROUP 15, PIGMENT DE... Potri.005G058000
[exp]
3.46 0.8702
AT5G19910 MED31 SOH1 family protein (.1.2) Potri.012G113400
[exp]
3.87 0.8701
AT1G02960 unknown protein Potri.002G208058
[exp]
9.79 0.8244
AT2G16370 THY-1 thymidylate synthase 1 (.1) Potri.004G157400
[exp]
10.48 0.7597 DHFR-TS-1,THY.3
AT1G15780 unknown protein Potri.003G013000
[exp]
15.65 0.8383
AT3G10440 Shugoshin C terminus (.1) Potri.008G032600
[exp]
16.43 0.8010
AT2G40980 Protein kinase superfamily pro... Potri.008G083300
[exp]
20.34 0.7749
AT2G36360 Galactose oxidase/kelch repeat... Potri.008G024700
[exp]
21.16 0.8176
AT3G03890 FMN binding (.1.2) Potri.013G057700
[exp]
24.00 0.7801

Potri.001G150800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.