Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17610 1935 / 0 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198200 [exp] 53 / 4e-07 AT4G15520 347 / 9e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001005 [exp] 2175 / 0 AT4G17610 1782 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10011019 [exp] 1957 / 0 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10012771 [exp] 52 / 1e-06 AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10034004 [exp] 50 / 4e-06 AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [poplar] [flax] SPOUT PF00588 [poplar] [flax] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Potri.001G150900.1 pacid=42792640 polypeptide=Potri.001G150900.1.p locus=Potri.001G150900 ID=Potri.001G150900.1.v4.1 annot-version=v4.1 ATGAATGCAGAAGAGAGCAATCCGATGGTCTCGATAATCTCCTCTCTATCTGACAGCTTCAAGCAAGTCCCTTTGGCAGCTCTCCCAGCAATGCTTGATT GCATTTTAGCATCAACTGGGCTATCTCCATCTGCCCTTTTTGCTTCACTTCTTGATTCATTCTCTAAATTTATCAAGGATGTTAGGGAGAAGGACTTGAA GTTGGACTCTAGCATGTGTAACTACATCACATCCATGGTGGGTTCGCTTTGCCATCTTCTAAACAAATTTGGAAATAATACTGATGGTCTGCAGTCATTT ATCTGGAAATGTTTTATTCCATTGATGAAGATGGTTCATGCTTTTGAGCGTGAAATGCTTAATGAGATTGCAGAGTCATTCTTTTGTGTCGTTAGCTCAA CTCATTCCTGGGGTGTTTTGGAAGCAAACTTGGTACCATTTTTTCTAAGATCAGTTGGTCTTTCTATCGGCATGATTCAAAATGAAGAATCAGATGCCTT TGAATGGGATCATTTCTCCATTTACCATGGTTTAAGTGACCTGGAAAATGATTTCGATTTGGATCAAGAGCCCATGCTGTCCCTGTCAGGGTCCTTTCCA CTACCAATATCATGCCATATTCTAACCTTAATCCTGGATGCTGCTCTGCAAAGTTTCCAGGCAGTTTCAAGCACAAAATCAATGTTGGCAAATGGGTTCT GTGATGTCGAAAAGCTATTTTCTAATTTGCTTTGGGATCTATGTAACATGAGTGAGCGATTGCTTTCACAAAGTTTGGAACATCGTTCTTGCACTATTGG ATTTCTGCTTCCAATCATTTTCAAAGCATTGGGTTCTCAGCGCTCTTTGGAAATCACAGTCCATGGGAAGATGTTTATACTGTCCAGAAACGTTTTCTTT AGGAAAATTTGGAAGCTGTGCAGATCATTGTTTTCTCTTGGACATTTAGAGAGAAGAGATGCCTATAATGTACTCTCTTTATACTTGTCCTTTTTCTCTT TGACAGAAGGATTTGGAAATGTTGATGCAAGTGTAAAAGCAGAAGAATTTGATGTAAGAGCTGAGAGGGAGTTTTGGGATGAAATAAAAAGAGGCCTGGT TGATGAAGAAGGCCTGGTAAGGAAGCAATCATTACACATATTGAAGACAGTACTACAGATAAGTGGTGGAAGCCAGTGCCACTCTGGGGTTTCAGAGAAG AAATCACAAGAGAAACACCCAGTTCCACATGGTATGACAAAGAGGGAAATGTGGGCTGACAAGGAAGCTAAATCCTTAGGTGTATGGGAACCCTGCAATT CAGCCGATTCTCCTTTAAACAGTCAGCAGCAGTGGGAAGCGTTTATACTCCTGTATGAAATGCTTCAAGAGTATGGTACGCACTTGGTAGAAGCTGCTTG GCATCACCAGCTAAACTTGTTGCTTCAGTTTTCTGTTTCAAACAATAATTTTACAAGCTATATCTTCAGAGGATTTCATCAAAAGCAGACTGATATTTTG AGAGAAGCATTTAGTTGGGTAACAATTTTATGGCAACTGGGCTTTCAACATGATAATCCTCAAGTTAGGTGCTTGATCATGGAGTCGTTTTTGGGCATTG AGTGGATGAAGTATGGAAACACTGCCAAATCAGTGTCTGAAAGTTTTGTTCTTGGACCATTCATTGAAGGGTTGAATGACCCTGTGCACCACAAAGATTT CGGTGTAAAAGGGTCTTACAATTCAAAGACTATTGAAGGTGCAGCCAGGTTCTTGCATCAATATACAAGTCACCTAAATACAAGGGAAGGGATTGCTTTT TTGCATAGTTTAGCATCTGTTGCCAAACATCACTCTTTTGGTCGAGCTGGATTAATGGGTCTTGCAGAATGTATTGCTTCAGCTGCAAATGGAGTAGGAA GGCATGATAGTGGAGCAAAATGGAGTGAAGATGCTTTTCCTGATGAGGTGCAAGTGGAATCTTCTCCTGAAAATTTTTCTGATTGTAGAACAGCCTTTTT GGATGTTCTGAGATTTGTTATTGAGAGCAGCAAGCAACATTTCAACCCTTATTATCGTCTTCAAGTTTGTGAAAAAGTTCTGGAGGCTGCTACTTCGCTG GTCAGTACACTTGATGTGCCTCTTGAGATTCTCTTGCACTTCATTGCTACACTACCACGGGCATTTACTGATTATGGGGGTTCTTTAAGATTAAAAACAC AAGAGTGGCTCTTGGGGTCTGCTACGGAACATTGTAATGTAAATTGCTGCGGTGCTGAGATTCAACTTCTGAAAAATCTTCAGGACTTCCCAGAAAGGTT TACAAGTTCTCAATACTTGGTTGATGGTTTTTTGAGTTTAGATGATGAAGACTTGGATGCATGGGAATCTGAATCAAAAAGATGGGCAAGAGCCCTTTTT CTTATAATCAAGGGGGAGGATCAACTAGCACCGATATTGAGATTTATTCAAAATTGTGGCGTCAACATCTGCAAACAACAGAGTCATTTAGAATGGCTAC CTGTGAAGTTTCTTGTCCTTGCTAGGAGCTTGGTTGCAGAGATTCAAATAATGCAGGAGAGATCAGCCCAATGTGGTATCAAAATTAAATGCAGATCAGA GATTAGCTTGCTTGATACGGTGGATCAATTGTGTTATACAGAAGCTTCTATGATTAATGGAAGAATTCATGGCCTTTTCCTGTTCATATTGGAGGAGCTG GTTTCTTTTGCCGACTTGTCTTCTTCCATATTTTGGTCTAGCATTACTAAGGAGACAACTCTTCCTGGTTCTGTGAGAGGAAAACTTGGAGGCCGTAGTC AACGTCGGTTGTCAACTTCTACCACCACTGCTATATTGCAAGCTATAACATCAATACAAGCGGTTGCATCCATTTCATCATGGTGTGCACAGTTTAAAAG TGATGTTAAGCTCAGTTCTGTGTGGAACTTTTTGTGGAAATTCTTCTGGAAGACGGTTTCCTCTCCAACTTGTGATTCTGAGGCTGGAGCAGAAATTTGT CTGGCAGCATATGAAGCATTAGCTCCTGTTTTGAGAGCTCTAGTTTCAACATCCTCTTCACTATCTTTGGATCTCATTAGAGAAAATGATGAATTTTCGG CACCTGTTGTAGAAGGCAAATGCTGCTTAGATTCTTTGGCTCTTTCTTTTCTTCAGAATATCAATAATCTCCTTGCAGTTGGAGTTCTGGCACGAACTCG ACGGGCAGTTTTGCTAAACCAGAAGTGGATTTGCTTGGAGTCTCTGCTGTCTATTCCTTACTCTGCTCCTTGGAATGTGCTAAATTTAGAGGATGGCAGC TTGTTCTTCTCGGATTCAGCAATCAGATGTATTTTCAGTGATCTTGTTGAAAGTCTTGATAATGCTGGGGAAGGTTCTGTTTTACCCATGCTGAGATCTG TCAGATTGGCTTTGGGCCTGATTGCCTCAGGAAAGTTAGATTCACATGTTTCCTCATGCAATGGTGTGGATGCTCAGATGATGTGGCGTTTGGTTAATTC ATCTTGGATATTGCATGTCAATTGCAACAAGCGGAGAGTGGCATCTATTGCTGCACTTTTGTCTTCTGTCTTGCATCGTTCCGTGTTTACAGATGAGGGC ATGCATTTAATCAACAATAGGCCCGGGCCTCTGAAGTGGTTTGTTGAAAATGTTATTGAGGAAGGTACAAAAAGTCCTCGTACAATTCGCCTTGCAGCAT TACATCTAACAGGACTGTGGCTCTCTCATCCAAAGACTATTAAGTATTACATGAAAGAACTGAAGTTGCTATCACTTTATGGTTCTGTTGCATTTGATGA GGATTTTGAAGCTGAATTATGTGACAATCAAGATGCAAGCACTGAAGTGTCATTATTGGCTAAAAGCCCAGACCCTGAGCTGACTGAAGCATTCATCAAC ACAGAATTGTATGCACGTGTGTCTGTAGCTGTTCTTTTTTACAAGCTTGCTGACTTGGCCAATTTGGTGGGATCGGCAAATGAGAATGAAGATTGTCACG CTGCTCTTGAATCTGGAAAATTGTTTCTGCAGGAGCTTCTTGATTCTGCGGTGAATGACAAAGATCTTGCAAAGGAGTTGTATAAAAAGTATAGTGGGAT CCATAGACGTAAAATACGAGCTTGGCAAATGATATGTGTTTTGTCACGATTTGTTACTGATGATATAGTTGCGCAAGTTACTCACAGCTTGCACATATCC CTCTATAGAAATAATTTTCCCGCAGTTCGTCAATACTTGGAAACTTTTGCAATTAACATCTACCTGAAATTCCCATTGTTGGTCAGGGAACAATTAGTAC CTATATTACGAGATTATAACATGAAGCCTCAGGCACTCTCTTCCTATGTGTTCATAGCAGCCAATGTCATCCTCCATGCTTCTAATGCAAATCAATCCAG GCACTTCAATGAATTGCTTCCACCTATAATTCCATTATTAACCTCACACCACCACAGTTTACGTGGTTTTACGCAGTTGTTAGTCTACCAAGTTTTTTGT AAATATTTTCCTATGTTGGACTATGGTGCCTCTGAAATGCCTTTAGAGAAAATGTGCTTTGAAGATTTGAAATCATACCTGGCAAAGAACCCTGATTGTA GGCGCTTACGAGCATCTTTGGAAGGATATCTTGATGCCTATAATCCCATAGCCTCTGGTACTCCAGCTGGAATTTTCATTGATCGGGTTGAGGAACTTGG GTTTGAATGTGTTCCAACATCCCTCATGGAGGAAGTGCTCAACTTTCTAAATGATGTCAGGGAAGACCTCAGATGTTCAATGGCAAAGGATGTTGTGACT ATCAAGAATGAGAGCTTAAAAACTGATGAAGATGGTAACTGCAGGCGAACAGTAATTGATTCCCAGCTGCCTAAAGAAACATCATTTGATTTCCAGAAAA AGCTTACTCTCTCTAAACATGAGAAACAAGACACTGATTCCAGCTCTGTTTTGGGGAACAATGAAGCATGCAAACAACTTTTAGAGATGGAAAAGGAAGA TGAGCTTCTTGATCAGTCACTTCAATCCAGAAGATTGACCATGGAAAAAATAAGAGCAAGTCGACAACAATTTATCCTAGTTGCATCATTGCTTGATCGG ATACCCAATCTTGCTGGATTGGCACGGACATGTGAGGTATTTAAGGTGTCAGGACTAGCCATTGCAGATGCAAGCATATTACGTGATAAACAATTCCAGC TCATCAGCGTGACAGCAGAGAAGTGGGTTCCTATAATAGAAGTCCCAGTAAACAGCGTGAAGCATTTCTTAGAAAAAAAGAAACGAGATGGCTTCTCAAT ATTGGGACTAGAACAGACAGCAAATAGTGTACCGCTCGATCACCATGCCTTTCCCAAAAAGACAGTACTGGTCCTTGGACGTGAAAAGGAGGGCATACCG GTGGACATTATCCATATGCTCGATGCTTGCATTGAGATTCCGCAATTGGGAGTAGTTAGGTCGCTTAATGTTCATGTTAGTGGGGCAATTGCCCTCTGGG AGTATACTCGACAGCAAAGATCTCAATAA
AA sequence Show only first row Show all	>Potri.001G150900.1 pacid=42792640 polypeptide=Potri.001G150900.1.p locus=Potri.001G150900 ID=Potri.001G150900.1.v4.1 annot-version=v4.1 MNAEESNPMVSIISSLSDSFKQVPLAALPAMLDCILASTGLSPSALFASLLDSFSKFIKDVREKDLKLDSSMCNYITSMVGSLCHLLNKFGNNTDGLQSF IWKCFIPLMKMVHAFEREMLNEIAESFFCVVSSTHSWGVLEANLVPFFLRSVGLSIGMIQNEESDAFEWDHFSIYHGLSDLENDFDLDQEPMLSLSGSFP LPISCHILTLILDAALQSFQAVSSTKSMLANGFCDVEKLFSNLLWDLCNMSERLLSQSLEHRSCTIGFLLPIIFKALGSQRSLEITVHGKMFILSRNVFF RKIWKLCRSLFSLGHLERRDAYNVLSLYLSFFSLTEGFGNVDASVKAEEFDVRAEREFWDEIKRGLVDEEGLVRKQSLHILKTVLQISGGSQCHSGVSEK KSQEKHPVPHGMTKREMWADKEAKSLGVWEPCNSADSPLNSQQQWEAFILLYEMLQEYGTHLVEAAWHHQLNLLLQFSVSNNNFTSYIFRGFHQKQTDIL REAFSWVTILWQLGFQHDNPQVRCLIMESFLGIEWMKYGNTAKSVSESFVLGPFIEGLNDPVHHKDFGVKGSYNSKTIEGAARFLHQYTSHLNTREGIAF LHSLASVAKHHSFGRAGLMGLAECIASAANGVGRHDSGAKWSEDAFPDEVQVESSPENFSDCRTAFLDVLRFVIESSKQHFNPYYRLQVCEKVLEAATSL VSTLDVPLEILLHFIATLPRAFTDYGGSLRLKTQEWLLGSATEHCNVNCCGAEIQLLKNLQDFPERFTSSQYLVDGFLSLDDEDLDAWESESKRWARALF LIIKGEDQLAPILRFIQNCGVNICKQQSHLEWLPVKFLVLARSLVAEIQIMQERSAQCGIKIKCRSEISLLDTVDQLCYTEASMINGRIHGLFLFILEEL VSFADLSSSIFWSSITKETTLPGSVRGKLGGRSQRRLSTSTTTAILQAITSIQAVASISSWCAQFKSDVKLSSVWNFLWKFFWKTVSSPTCDSEAGAEIC LAAYEALAPVLRALVSTSSSLSLDLIRENDEFSAPVVEGKCCLDSLALSFLQNINNLLAVGVLARTRRAVLLNQKWICLESLLSIPYSAPWNVLNLEDGS LFFSDSAIRCIFSDLVESLDNAGEGSVLPMLRSVRLALGLIASGKLDSHVSSCNGVDAQMMWRLVNSSWILHVNCNKRRVASIAALLSSVLHRSVFTDEG MHLINNRPGPLKWFVENVIEEGTKSPRTIRLAALHLTGLWLSHPKTIKYYMKELKLLSLYGSVAFDEDFEAELCDNQDASTEVSLLAKSPDPELTEAFIN TELYARVSVAVLFYKLADLANLVGSANENEDCHAALESGKLFLQELLDSAVNDKDLAKELYKKYSGIHRRKIRAWQMICVLSRFVTDDIVAQVTHSLHIS LYRNNFPAVRQYLETFAINIYLKFPLLVREQLVPILRDYNMKPQALSSYVFIAANVILHASNANQSRHFNELLPPIIPLLTSHHHSLRGFTQLLVYQVFC KYFPMLDYGASEMPLEKMCFEDLKSYLAKNPDCRRLRASLEGYLDAYNPIASGTPAGIFIDRVEELGFECVPTSLMEEVLNFLNDVREDLRCSMAKDVVT IKNESLKTDEDGNCRRTVIDSQLPKETSFDFQKKLTLSKHEKQDTDSSSVLGNNEACKQLLEMEKEDELLDQSLQSRRLTMEKIRASRQQFILVASLLDR IPNLAGLARTCEVFKVSGLAIADASILRDKQFQLISVTAEKWVPIIEVPVNSVKHFLEKKKRDGFSILGLEQTANSVPLDHHAFPKKTVLVLGREKEGIP VDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	0	1
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	4.00	0.8636
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	5.29	0.8367
					Potri.013G071800 [exp]	6.24	0.8524
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	7.34	0.8579
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	8.36	0.8149
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G066600 [exp]	9.00	0.8349
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	10.77	0.8439
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	12.64	0.8360
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	13.60	0.8395	RGA.64
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	13.63	0.8391

Compare expression of checked genes

Potri.001G150900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.