Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19170 616 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 612 / 0 PA-domain containing subtilase family protein (.1) AT5G44530 573 / 0 Subtilase family protein (.1) AT4G20430 573 / 0 Subtilase family protein (.1.2) AT1G30600 564 / 0 Subtilase family protein (.1) AT1G62340 557 / 0 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G34980 308 / 1e-92 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 286 / 2e-84 Subtilase family protein (.1) AT1G32960 280 / 4e-82 ATSBT3.3 Subtilase family protein (.1) AT3G14067 274 / 4e-80 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076200 [exp] 630 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 626 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.011G155400 [exp] 567 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.001G440300 [exp] 566 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G010700 [exp] 363 / 2e-116 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.009G133400 [exp] 311 / 9e-94 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.004G173900 [exp] 299 / 3e-89 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G455800 [exp] 297 / 2e-88 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.014G074600 [exp] 295 / 9e-88 AT1G01900 788 / 0.0 subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040146 [exp] 1142 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 1141 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 1066 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10011018 [exp] 767 / 0 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1) Lus10006973 [exp] 597 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 563 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 555 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10015559 [exp] 548 / 0 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10001310 [exp] 523 / 2e-174 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10008060 [exp] 332 / 1e-100 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.001G151100.1 pacid=42788730 polypeptide=Potri.001G151100.1.p locus=Potri.001G151100 ID=Potri.001G151100.1.v4.1 annot-version=v4.1 ATGAAAAGAAAAGGGTCATTACATAACCCGCTTCTCATCAGCAGGACATCAGTGCCACTGACAATGTCTTCCATTTTCTCCTCCATTCTTTTCATTTCCT TTGTCATAATCGTTGATCCTCTAAGAGCTGAAGCAAAAGTTCTCATTGTTTTGATGGATGATGAACCTGTCTTCTCTTTCAAATCAAAGCAAGCCCATTC TAGAAAATCAAATTTGACTCCGCATAGGATTGAGGAGGCATCTTTGGCATACAAAGAGAGATTAAGGACAAGCCATGACGTATTCTTAGAATCCCTGCTC CTGAAAGATACCTACAACAAGCTCTACAGCTACACTCATTTGCTTAATGGGTTTGCAGTCAATGTTCAGTCCAAGGAGGTCCTCAGAACTCTGAAGAACG CAACAGGAGTTAGAGCTATCCATGAAGATGTCAAAATGGAGAAGTTTACAACACATACACCTCGCTTTCTTGGGATTCCTACTGGTGTTTGGCCAATTTT AGGGGGAGCAGAGAGTTCGGGTGAGGGGGTAATAATAGGTTTTATTGACACGGGGATAAACCCTCTCCATCCAAGTTTTACGGGTGGTTCCTCTGCACGA TTTACAAACAGTTCCAAATTCAAAGGAAAATGTGTCACCGGAGAGAAGTTCCCTTCAACAGCATGTAATGGCAAGATAGTAGGGGCACAATATTTTGCTC GTGCAGCAATAGCTGCTGGTGACTTCAATGCAACACGCGATTATGCATCCCCCTATGATGCTGATGGTCATGGAAGCCATACAGCCTCCACAGCTGCTGG AAACCACCAAATACCAGTGATTGCCAACGACTTCAATTACGGTTATGCAAGTGGCATGGCTCCTGGAGCAAGGATTGCTGTGTACAAAGCTCTTTACACA TTTGGAGGTTACATGTCAGATGTCGTGGCTGCTGTGGATCAGGCAGTGGAGGATGGAGTTGATATATTAAGCCTCTCCATAGGGCCATCTAGTGTCCCAT CTGGTCCTTCTGCCTTCCTCAATGTGCTAGAAATGGAGCTTTTATTTGCTACAAAAGCTGGAGTTTTTGTTGTTCAAGCTGCTGGAAATGGTGGCCCTTC TCCCAGTTCGATCCTTTCTTTTAGCCCCTGGATCACTAGTGTAGCTGCCTCCATCATCGATCGCAAGTACAGCAACTCAATCATTCTTGGGAATGGGCGA AGCTTCTCTGGCACTGGTCTTGCCCCTCCAACAGCAGGAGAAATGCCTTACCGAATAGTGGCAGCAGCTGATGTCTCTCATAGGAACACCACTAGTGTTC TAGAAGTTGAAAGCTGTCAGCATCCAGAACACTTCATCTTATCATCAGTTCGAAACAAGCTGGTTATCTGCACTTATACCTTTGACTTTGAATATGAGGC TGCAAGCATCGCAGCTGTTGCGAACACTATACAGAAGATAGGGGCTGCGGGTTTTATCATCACAATGGATCCTGACATTGGTTCTGAGCAAGTCAAGGGT ACCACAATGACTATGCAAGTACCTGCCATTATACTGAACAACATACAATCTTCCAGAGCATTGTGGGAGTATTATAACTCAAATACCATCAGGAGTACCA GTGGACAAGCTGTGGGTTTTGCTGCCAGGGCAAGAATAATGGATGGAAGGCGAGCATTCTTTACTCGGCAGGCACCAATTGTTGCATCCTATTCGTCTAG AGGTCCCGATGTGAGCAATGCACTTTTGCAAACTGCTGATGTCCTCAAACCAAATGTCATGGCCCCAGGATCCTCCATTTGGGCTGCGTGGAGCCCCAAC AGTGAAGGAGATCCTTCTATCAAGGGGCAAAACTTTGCGCTTGTATCTGGTACTAGCATGGCCACTCCTCACATAGCTGGTGTTGCGGCTTTAATCAAGC AAAAGCACCCTAGGTGGAGTCCAGCAGCAATCACATCAGCAATGATGACCACTGCTAGTACATTTGACCATTCTGGCTCTCCCATTTTAGCACAATTAAC TAACCAAATAGCCCCTGCTACACCGTTCGATTTTGGTGCTGGATTCATAAACCCAGTTCATGCCATCGACCCAGGACTCGTATTCGATTCTCATTTTGAA CAATATGTCCAGTTTCTTTGTGCTGTTCCAGGTGTTGATGAAGGTTCTGTAAGACGAGCAGTAGGAACTAGTTGTCCAACAAATAGAAGAGCATGGTGTT CAGATTTGAACACCGCAAGTGTGACAATTTCGAATCTAGTTGGGTCAAGAAAGGTGATTCGTAGTGTTACAAACGTGAGCAGCAGGAATGAGGTTTATAG AGTGACTGTGAGACAACCATCAGGTGTAAACGTAACTGTTTCCCCACGAGTAGTTGTGATAAACGGTAATGCTTCGAAGCATCTTAGGATTGTGTTGACG GCAATTAAGGCAACGAGAACTTACACATTCGGAGAGATGGTGTTGCATGGAAGCAGAAAGCATGTTGTTAGAGTTCCTATAGCTGTTTACGTTAGCACAT CATTGAAAAGCTGA
AA sequence Show only first row Show all	>Potri.001G151100.1 pacid=42788730 polypeptide=Potri.001G151100.1.p locus=Potri.001G151100 ID=Potri.001G151100.1.v4.1 annot-version=v4.1 MKRKGSLHNPLLISRTSVPLTMSSIFSSILFISFVIIVDPLRAEAKVLIVLMDDEPVFSFKSKQAHSRKSNLTPHRIEEASLAYKERLRTSHDVFLESLL LKDTYNKLYSYTHLLNGFAVNVQSKEVLRTLKNATGVRAIHEDVKMEKFTTHTPRFLGIPTGVWPILGGAESSGEGVIIGFIDTGINPLHPSFTGGSSAR FTNSSKFKGKCVTGEKFPSTACNGKIVGAQYFARAAIAAGDFNATRDYASPYDADGHGSHTASTAAGNHQIPVIANDFNYGYASGMAPGARIAVYKALYT FGGYMSDVVAAVDQAVEDGVDILSLSIGPSSVPSGPSAFLNVLEMELLFATKAGVFVVQAAGNGGPSPSSILSFSPWITSVAASIIDRKYSNSIILGNGR SFSGTGLAPPTAGEMPYRIVAAADVSHRNTTSVLEVESCQHPEHFILSSVRNKLVICTYTFDFEYEAASIAAVANTIQKIGAAGFIITMDPDIGSEQVKG TTMTMQVPAIILNNIQSSRALWEYYNSNTIRSTSGQAVGFAARARIMDGRRAFFTRQAPIVASYSSRGPDVSNALLQTADVLKPNVMAPGSSIWAAWSPN SEGDPSIKGQNFALVSGTSMATPHIAGVAALIKQKHPRWSPAAITSAMMTTASTFDHSGSPILAQLTNQIAPATPFDFGAGFINPVHAIDPGLVFDSHFE QYVQFLCAVPGVDEGSVRRAVGTSCPTNRRAWCSDLNTASVTISNLVGSRKVIRSVTNVSSRNEVYRVTVRQPSGVNVTVSPRVVVINGNASKHLRIVLT AIKATRTYTFGEMVLHGSRKHVVRVPIAVYVSTSLKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G151100 [exp]	0	1
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	1.73	0.9286
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G021250 [exp]	4.69	0.8719
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145100 [exp]	5.00	0.8964
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.006G117300 [exp]	6.00	0.8808
AT5G41560			unknown protein		Potri.001G099200 [exp]	12.32	0.8028
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Potri.009G059200 [exp]	13.41	0.8106	Pt-TWD1.1
AT5G35390			Leucine-rich repeat protein ki...		Potri.018G147300 [exp]	14.24	0.8952
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	16.73	0.7843
					Potri.002G154150 [exp]	17.14	0.8568
AT5G05570			transducin family protein / WD...		Potri.016G117700 [exp]	18.30	0.7852

Compare expression of checked genes

Potri.001G151100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.