Plant FIBer expression Database

Potri.001G151150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G151150.1 pacid=42789476 polypeptide=Potri.001G151150.1.p locus=Potri.001G151150 ID=Potri.001G151150.1.v4.1 annot-version=v4.1
ATGCCAAGAAAAATGGCAAAGTTGTGCAGGGGGAAGGCAGTGATAGTGAGTGTGTATGAAGAGAGGCCAGGGAAAAGAAGGGTCTCATCATCATCAAATA
GCCATCACCACCATCACCATCACCATCACTATGTCCATCATGTCATCAAACAAGAGGTAAACCTACACAAGAATGGAGATTCTCGTAAAGGATACAGTAG
AAGAGCTGAGCTTCTTCACTATTCTCAACGCCTTCGAGAGTCTGCTCTATCAGCAACATCCTCCCCTTCAGTACCAAAGCCAATTTCTTCCAACAACCAC
CACCACCAACCCACAACAAACATTGTTGCTGCTCCAAGCAAGCCAAGATTCTCCAGGAGCACTAGTCCTACTTGTCTAGGCAATTGGAAGATCTTGATTC
CGAATATTTGCAGATCTTTGACAAGTATCCAAGCTAAGCAAAAGAAGAAAAAGAAACATAGTGGATCCACAAGCAATGCCATGATAACTGTAATGAAAAG
CCTAGAGGTACAAAAGAAGAAGGGATTTATTCTGAAACTGCTCTCAAAACTGCAAAGGCATAGATGA
AA sequence
>Potri.001G151150.1 pacid=42789476 polypeptide=Potri.001G151150.1.p locus=Potri.001G151150 ID=Potri.001G151150.1.v4.1 annot-version=v4.1
MPRKMAKLCRGKAVIVSVYEERPGKRRVSSSSNSHHHHHHHHHYVHHVIKQEVNLHKNGDSRKGYSRRAELLHYSQRLRESALSATSSPSVPKPISSNNH
HHQPTTNIVAAPSKPRFSRSTSPTCLGNWKILIPNICRSLTSIQAKQKKKKKHSGSTSNAMITVMKSLEVQKKKGFILKLLSKLQRHR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G151150
[exp]
0 1
AT1G79620 Leucine-rich repeat protein ki... Potri.013G053001
[exp]
4.58 0.9828
AT1G56140 Leucine-rich repeat transmembr... Potri.018G132900
[exp]
7.34 0.9789
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Potri.005G188500
[exp]
7.61 0.9366
AT4G08250 GRAS GRAS family transcription fact... Potri.019G007100
[exp]
8.00 0.9727
AT1G09560 GLP5 germin-like protein 5 (.1) Potri.009G157100
[exp]
8.06 0.9795 Pt-GER2.21
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.013G157100
[exp]
8.83 0.9804
AT1G16060 AP2_ERF ADAP ARIA-interacting double AP2 do... Potri.018G102200
[exp]
9.00 0.9624
AT1G16250 Galactose oxidase/kelch repeat... Potri.011G046100
[exp]
9.94 0.9759
Potri.015G061500
[exp]
11.22 0.9347
AT4G14746 unknown protein Potri.003G057700
[exp]
11.83 0.9796

Potri.001G151150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.