Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Lil3_3,Pt-LIL3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17600 268 / 2e-90 LIL3:1 Chlorophyll A-B binding family protein (.1) AT5G47110 259 / 6e-87 LIL3:2 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083500 [exp] 385 / 2e-136 AT4G17600 300 / 3e-103 Chlorophyll A-B binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040147 [exp] 267 / 5e-90 AT4G17600 289 / 1e-98 Chlorophyll A-B binding family protein (.1) Lus10001008 [exp] 253 / 9e-85 AT4G17600 270 / 2e-91 Chlorophyll A-B binding family protein (.1) Lus10011016 [exp] 249 / 3e-83 AT4G17600 273 / 1e-92 Chlorophyll A-B binding family protein (.1) Lus10000959 [exp] 0 / 1 AT4G17600 141 / 3e-65 Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.001G151300.2 pacid=42792503 polypeptide=Potri.001G151300.2.p locus=Potri.001G151300 ID=Potri.001G151300.2.v4.1 annot-version=v4.1 ATGTCTTTGTTCCCTCCGCCACTAACTCGCCTTCCACTCTCCTTCTCTTCCAAGCACCATATCATTTTCAAACCCACACTCTCTCTCAGACCCACAAGCC CTCCTTTTCTCCTCTCCACTTCCAAGGCCTCTACAGACGATGGAGGAGCTGGAGTTTCAGCCTCTTCCGCCACTGTAGAAGAACCAAAATTGGAGCAGAA GGCACCAGATTCTTCTGAATCAGTTCCTGTGGCTGAGAAGAACTCTAATGGAGCTGTGGCTCCTGGTGGAGGGGTGGAGGTTGAAGTGAGTAAATTTGAG GACCCCAGGTGGATTTCAGGGACTTGGGACTTGAAGCAGTTTGAGAAAGATGGGAAAACTGATTGGGATGCTGTTATTGATGCTGAGGTTAGGAGGAGAA AATGGCTCGAGGGTAACCCAGAATCATCAAGTAATGATGACCCTGTTGTTTTTGACACCTCAATAATACCATGGTGGGCATGGATGAAAAGATTCCATCT GCCTGAAGCAGAACTTCTCAATGGCCGTGCTGCAATGATTGGGTTCTTCATGGCTTACCTGGTTGATAGCTTGACTGGTGTTGGTGTCGTTGATCAGATG GGCAACTTCTTCTGCAAAACTCTATTGTTTGTAGCTGTGGTAGGAGTACTTTTAATACGAAAGAATGAGGATTTAGAAACCATAAAAACATTGCTGGAGG AGACAACCTTCTATGACAGGCAATGGCAAGCAACCTGGCAGGATGAGACATCTTCCATCCCTAAAAATGAGTAG
AA sequence Show only first row Show all	>Potri.001G151300.2 pacid=42792503 polypeptide=Potri.001G151300.2.p locus=Potri.001G151300 ID=Potri.001G151300.2.v4.1 annot-version=v4.1 MSLFPPPLTRLPLSFSSKHHIIFKPTLSLRPTSPPFLLSTSKASTDDGGAGVSASSATVEEPKLEQKAPDSSESVPVAEKNSNGAVAPGGGVEVEVSKFE DPRWISGTWDLKQFEKDGKTDWDAVIDAEVRRRKWLEGNPESSSNDDPVVFDTSIIPWWAWMKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGVVDQM GNFFCKTLLFVAVVGVLLIRKNEDLETIKTLLEETTFYDRQWQATWQDETSSIPKNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	0	1	Lil3_3,Pt-LIL3.1
AT2G24090			Ribosomal protein L35 (.1)		Potri.018G102700 [exp]	1.00	0.9928
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.001G301100 [exp]	1.41	0.9863	SEP1.1
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	4.00	0.9811
AT1G78995			unknown protein		Potri.007G003600 [exp]	4.58	0.9796
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	4.58	0.9862
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.004G053400 [exp]	5.47	0.9796	Pt-CHLI1.1
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Potri.013G160600 [exp]	7.41	0.9744
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	8.48	0.9785
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	9.21	0.9799
AT3G51510			unknown protein		Potri.001G455900 [exp]	9.79	0.9709

Compare expression of checked genes

Potri.001G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.