Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16970 614 / 0 Protein kinase superfamily protein (.1) AT4G19110 68 / 1e-11 Protein kinase superfamily protein (.1.2.3) AT3G48750 64 / 1e-10 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT2G30980 64 / 2e-10 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 64 / 2e-10 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT1G71530 64 / 3e-10 Protein kinase superfamily protein (.1.2) AT3G01085 64 / 5e-10 Protein kinase superfamily protein (.1) AT3G05840 63 / 5e-10 ATSK12 Protein kinase superfamily protein (.1.2) AT1G54610 63 / 5e-10 Protein kinase superfamily protein (.1.2.3) AT4G10010 63 / 6e-10 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082600 [exp] 1420 / 0 AT4G16970 603 / 0.0 Protein kinase superfamily protein (.1) Potri.003G101600 [exp] 67 / 3e-11 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G059000 [exp] 64 / 2e-10 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.013G004700 [exp] 64 / 2e-10 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G100100 [exp] 64 / 2e-10 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G103300 [exp] 64 / 4e-10 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 63 / 5e-10 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G061400 [exp] 63 / 6e-10 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.005G005400 [exp] 62 / 6e-10 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004357 [exp] 709 / 0 AT4G16970 589 / 0.0 Protein kinase superfamily protein (.1) Lus10040153 [exp] 399 / 2e-132 AT4G16970 355 / 1e-115 Protein kinase superfamily protein (.1) Lus10008303 [exp] 71 / 3e-12 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033278 [exp] 71 / 3e-12 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 70 / 5e-12 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003155 [exp] 67 / 4e-11 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10039167 [exp] 66 / 1e-10 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10025395 [exp] 65 / 1e-10 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10013766 [exp] 66 / 2e-10 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10017371 [exp] 65 / 2e-10 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G151900.8 pacid=42789685 polypeptide=Potri.001G151900.8.p locus=Potri.001G151900 ID=Potri.001G151900.8.v4.1 annot-version=v4.1 ATGTATTTTAGGAAACGGAAGCGAATTGGATTTGATTATGCAGATGTGTACGATAAGGATCAAGAAGTTTGTCCTTTGCCGAAAAGAATTCGAAATGATT GCTGGAAGCTACCTTTTCACTTAACCGGGGATGTCAGCAGCAGCATTAATGTTGAGCCTAGTTACATGCTAATCCAGCCAAATAATTCTTTTCTTTCACC CGACTTTTTTGTTAAAACCTTAGCCAGCGAATTAGGTTGTAAATTAAGGAATATTGAACATGTAGAAGATGAGATGAATACAGGGGCTATTGTGGAAAGC AAGGAGGATAAGAGAATGATGGCATGTGAGCTTGATGAATATTCTGCTCTTCCCATTGTAATGTTGGATAGCGAAGCTGTATTCCAAGAGGCTAAAGTGG ATGAGATAGATCTTGAAAGTAGAATAGACATCAATGCCACATGTTGCTTGGCTGATGTCAAATGGAGCAAAACATTTTCGTTGGAGTTTACGAGTATTAA TGGTGCATGTAATGGTACAAATGACTGTCGTATTGAAACTGTAAGAACTGAAACCAACGAAGAACTGTTAATTGATTATGGTAAAATGGAAGGGGAAGGC ATAAACCATTTTCAGTCAACTAACACTACTTTTAATATGCCACAAGAAAGCAACTTTAGAAGGATGAATGAGCTGAGTTCTCTGGATAAAGAGGCAATAA CTAACCATGTGAAAAATCAGGCTAAGGTTTCAACTACTGAGCTTTGTGTTCCTCCAAAGAAGTTAAAAGACTCAAAACCCTCCACCAAGATTAGGGTCAC AACTGGTGTTGCTGCTTCTCCAAGACAGCAAGCTCTCTGCCAGTCCCTAGAGCAAAAGAAGGCTGTTATCCCTCCTAAAGAGAACCAGCGCAGGAGGAAG GATCACATGAAAATCAGCATGGGGCAAAAATCAAAGCAGACATGCAATGATATTCATACTAAAGAAAGAAAGAAGGATTGCGCCCTTAATTCTCCCAAGG ATCGAGTGGGATCCAAAGACTTTCCATGCTTTGATTCTTATATTGTTGAAGAGGAAGGAGGCTCAGGTGGTTATGGCACTGTTTACCGGGCAACGAGGAA GCTAGATGGTACCACAGTTGCCATCAAATGTCCTCATGAGAATGCTCATAGACATCATTTTAGCAACGAACTCAGGATGCTGGAGCGCTTCGGGGGCAAA AATTTTGTGATAAAATTTGAAGGCTGTCTCAAGAACCAAAATTCTGACTGCTTTGTTTTGGAGTATGTTGAGCATGACAGACCAGAGGTGTTGAAAAAGG AAATAGATGTTTTTCAGCTCCGGTGGTACGGGTACTGCATGTTCAGAGCCCTTGCGAGTCTTCATAAACAGGGAGTGGTCCACAGAGACATAAAACCTGG CAACTTCCTTTTCTCCTGCAAAGCCAATAAAGGTTATCTCATCGATTTCAATCTTGCCCTGGATCTGCATCAAAAGCTTGGAACAATTAACAAATCAAAG GCAGCTAATGACGTAAGCTTCAATAGTGTTGCAGCTTCCAATGCCAAATATGTTCCTCCTTCGAAAAGTAGGAGGTTCCCAGGTAGTAAATTCTTGGATG CAGTTGATCTGGAAGCGATAAAAGACTTCAAGTCTACTTTGGAGGCCAAGAATGTAAAAAAGAAGGCTGTTAGGAATATTATGATTAGTCAGGGAGCAGA TGGCTCTGGTATAACCTCGGTCAAGGATGCAACAAGTGCTAGGACTCCTTCAGCAGAAAGGATGAAAGAGCCTCTGCCAAGCAAAGGTAGGAAGGAGCTT ATCAGCTTGTTGCATGAAGCAATGCAGAGTCCGAATCATGAAGCATCAAGTTTTCCAGCTTCTATGAGGAAGAGGATAGCTGCGCCTCCTGGAAAAGTAG ATGGAAGACATATTTATCTTACTCCAATGCCTGTGCACTCAACTGGCATACCAGTTGCTGGGATTGGTTTAGTTAAGAACAAATGTGGTGATGGGAAGAA CAAGAAAGAAGGCCCTTGTGTTGGAACTAAAGGTTTCCGGGCTCCAGAGGTCTTGTTCAGATCTCTCCATCAAGGGCCCAAGGTTGATATTTGGTCTGCT GGGGTCACCTTATTATACCTGATAATAGGAAAAACGCCCTTTTATGGTGATCCCGAACAGAATATAAAGGACATAGCAAAGTTAAGAGGCAGTGAAGATC TATGGGAAGTCTCAAAGCTACATAACCGAGAATCCTCATTCCCAGCGGACCTGTATAATATGCAATCTTTGCCACCCACGACAATTTGGGAATGGTGCAA GCTGAACTCAAAAAGACAAGATTTCCTGGATGCAGTCCCAAGCTCACTTATTGACCTCGTGGACAAATGTTTGACAGTGAATCCCAGATTGAGGATTAGT GCAGATGATGCTCTAAAACACGAGTTCTTTGCTCCATGCAATGAGAGCCTTCGAAGGCAGAAGCTGCTCAGGCAGGGACACAGCTTGGACTCTCGAACTA AAACTCCTTCACATGGACAAAGCATTGCCAGACCTATCAAGATTTCTCAACGGCAACCTTGA
AA sequence Show only first row Show all	>Potri.001G151900.8 pacid=42789685 polypeptide=Potri.001G151900.8.p locus=Potri.001G151900 ID=Potri.001G151900.8.v4.1 annot-version=v4.1 MYFRKRKRIGFDYADVYDKDQEVCPLPKRIRNDCWKLPFHLTGDVSSSINVEPSYMLIQPNNSFLSPDFFVKTLASELGCKLRNIEHVEDEMNTGAIVES KEDKRMMACELDEYSALPIVMLDSEAVFQEAKVDEIDLESRIDINATCCLADVKWSKTFSLEFTSINGACNGTNDCRIETVRTETNEELLIDYGKMEGEG INHFQSTNTTFNMPQESNFRRMNELSSLDKEAITNHVKNQAKVSTTELCVPPKKLKDSKPSTKIRVTTGVAASPRQQALCQSLEQKKAVIPPKENQRRRK DHMKISMGQKSKQTCNDIHTKERKKDCALNSPKDRVGSKDFPCFDSYIVEEEGGSGGYGTVYRATRKLDGTTVAIKCPHENAHRHHFSNELRMLERFGGK NFVIKFEGCLKNQNSDCFVLEYVEHDRPEVLKKEIDVFQLRWYGYCMFRALASLHKQGVVHRDIKPGNFLFSCKANKGYLIDFNLALDLHQKLGTINKSK AANDVSFNSVAASNAKYVPPSKSRRFPGSKFLDAVDLEAIKDFKSTLEAKNVKKKAVRNIMISQGADGSGITSVKDATSARTPSAERMKEPLPSKGRKEL ISLLHEAMQSPNHEASSFPASMRKRIAAPPGKVDGRHIYLTPMPVHSTGIPVAGIGLVKNKCGDGKNKKEGPCVGTKGFRAPEVLFRSLHQGPKVDIWSA GVTLLYLIIGKTPFYGDPEQNIKDIAKLRGSEDLWEVSKLHNRESSFPADLYNMQSLPPTTIWEWCKLNSKRQDFLDAVPSSLIDLVDKCLTVNPRLRIS ADDALKHEFFAPCNESLRRQKLLRQGHSLDSRTKTPSHGQSIARPIKISQRQP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	0	1
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	1.00	0.9645
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	1.41	0.9581
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	2.00	0.9558
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Potri.001G225600 [exp]	2.44	0.9569	SYN3.1
AT2G37960			unknown protein		Potri.006G094600 [exp]	3.46	0.9460
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	3.74	0.9449
AT3G55490			GINS complex protein (.1)		Potri.010G189200 [exp]	4.69	0.9255	Pt-TTN10.2
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	5.29	0.9216
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	5.47	0.9263
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	5.91	0.9507

Compare expression of checked genes

Potri.001G151900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.