Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45140 296 / 6e-102 PVA12 plant VAP homolog 12 (.1) AT3G60600 291 / 4e-100 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 253 / 4e-85 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT1G51270 219 / 8e-69 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G23830 187 / 2e-60 PapD-like superfamily protein (.1) AT5G47180 167 / 9e-52 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G08820 159 / 2e-46 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT4G21450 63 / 2e-11 PapD-like superfamily protein (.1.2.3) AT4G05060 62 / 4e-11 PapD-like superfamily protein (.1) AT5G54110 59 / 4e-10 ATMAMI membrane-associated mannitol-induced (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076100 [exp] 400 / 4e-143 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 313 / 5e-109 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 313 / 7e-109 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.002G144800 [exp] 271 / 2e-92 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.013G031400 [exp] 160 / 2e-47 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.005G044900 [exp] 153 / 1e-44 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 131 / 1e-37 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 133 / 2e-37 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1) Potri.001G152100 [exp] 129 / 1e-36 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008512 [exp] 315 / 2e-109 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10007463 [exp] 315 / 6e-109 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 310 / 4e-104 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10015885 [exp] 295 / 2e-101 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10010360 [exp] 289 / 3e-99 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 279 / 2e-95 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10009279 [exp] 301 / 1e-93 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000591 [exp] 150 / 9e-45 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10000032 [exp] 146 / 1e-44 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1) Lus10033837 [exp] 150 / 3e-42 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.001G152000.1 pacid=42792182 polypeptide=Potri.001G152000.1.p locus=Potri.001G152000 ID=Potri.001G152000.1.v4.1 annot-version=v4.1 ATGAGCACGGGAGAGCTCCTTGGCATCGAACCTCTTGAGCTCAAATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGTTCTCTTCAACTGTCTAATAAAA CTGATAATTATGTCGCTTTCAAGGTCAAAACAACAAATCCCAAGAAGTACTGTGTCCGACCAAATGCTGGGATTGTGTTGCCTCGCTCCACATGTGATGT TATAGTCACGATGCAAGCACAAAAGGAAGCTCCTCCTGACATGCAATGCAAGGACAAGTTTTTGCTTCAAAGTGTTAAAGCTAATGATGGTGTCACTGTA AAGGATATTAATGCAGAAATGTTCAGTAAGGAGGCAGGGCATGTTGTCGAGGAGTGCAAATTGAGAGTGCTTTATGTTTCTCCCCCTCAACCACCTTCTC CTGTTCTAGAAGGGTCCGAGGAAGGGTCACCCCCCTGGGGTTCTGTGTCAGACAATGGGAATGTTAATGGCACTGATTTATCTACTGGAACAAGGGCATT TGTTGAGCATCTTGAACCTCGAGACAAACCTTTGGAGGCAGGAGCTCTCATTTCAAAGCTGACTGATGAAAGGAATAATGCAATTCAACAAAATAACAAG CTTCGTCAAGAATTGGAGCTCCTGAGATGCCAAGGCAACAAAAATCGGTCTGGTGCATCATTAATGTTCGTCATCATTATTGGCTTGCTTGGCTTATTGT TGGGGTATCTCATGAAGAAGACGTAA
AA sequence Show only first row Show all	>Potri.001G152000.1 pacid=42792182 polypeptide=Potri.001G152000.1.p locus=Potri.001G152000 ID=Potri.001G152000.1.v4.1 annot-version=v4.1 MSTGELLGIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNAGIVLPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVKANDGVTV KDINAEMFSKEAGHVVEECKLRVLYVSPPQPPSPVLEGSEEGSPPWGSVSDNGNVNGTDLSTGTRAFVEHLEPRDKPLEAGALISKLTDERNNAIQQNNK LRQELELLRCQGNKNRSGASLMFVIIIGLLGLLLGYLMKKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	0	1
AT5G64180			unknown protein		Potri.015G005600 [exp]	1.41	0.9539
AT4G00560			NAD(P)-binding Rossmann-fold s...		Potri.014G079700 [exp]	2.44	0.9440
AT1G04910			O-fucosyltransferase family pr...		Potri.001G316800 [exp]	3.46	0.9312
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	5.47	0.9425
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	6.32	0.9414
					Potri.001G466500 [exp]	7.00	0.9379
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	7.74	0.9380
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.010G204000 [exp]	9.79	0.9369
AT3G51390			DHHC-type zinc finger family p...		Potri.007G060100 [exp]	9.89	0.8952
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.001G159700 [exp]	10.48	0.9316

Compare expression of checked genes

Potri.001G152000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.