Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17560 177 / 1e-55 Ribosomal protein L19 family protein (.1) AT5G47190 177 / 3e-55 Ribosomal protein L19 family protein (.1) AT4G11630 103 / 5e-27 Ribosomal protein L19 family protein (.1) AT5G11750 103 / 8e-27 Ribosomal protein L19 family protein (.1) AT1G24240 83 / 5e-19 Ribosomal protein L19 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086800 [exp] 96 / 1e-23 AT4G11630 204 / 4e-66 Ribosomal protein L19 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023720 [exp] 176 / 5e-55 AT4G17560 224 / 3e-74 Ribosomal protein L19 family protein (.1) Lus10014467 [exp] 175 / 2e-54 AT4G17560 223 / 9e-74 Ribosomal protein L19 family protein (.1) Lus10041948 [exp] 106 / 9e-28 AT4G11630 219 / 4e-72 Ribosomal protein L19 family protein (.1) Lus10017958 [exp] 62 / 6e-11 AT4G11630 155 / 3e-46 Ribosomal protein L19 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [poplar] [flax] KOW PF01245 [poplar] [flax] Ribosomal_L19 Ribosomal protein L19
Representative CDS sequence Show only first row Show all	>Potri.001G152200.2 pacid=42788077 polypeptide=Potri.001G152200.2.p locus=Potri.001G152200 ID=Potri.001G152200.2.v4.1 annot-version=v4.1 ATGGGCTCTAAAATTCTCCCTCAGGCACTTGCTGTTATACCCAGGAGTCCTACTCAATTTCCTGTCCCGAAGAAATTAGGTTTTTCTTCAACAATCAATC GCAGCTCTTATCTTTCCAACTCAGCTTCTTCTAGTAGATTTTCAGTCTCTAGGGTTTCTTCAACCTCATTAAGTTCGAATCTTGAAGCATTTTTTAAGGA CTTTTCGAGGCAGAGTTTTGTAACGAGAGCCGAGTCGGAGTCTGGAGGTGGAGAAGTTGTGGAAGAAACTGAGAATGTTGAGGAAGAAGTAGTTGTAGAA GGGAGTGAGGAAGAGGAAGTTCAAGCTGAAGCTGAAGTTGAAGGAGCTGTTAAAGAACCCAGAAAGCCTCGAGTTAAGCTTGGAGATATAATTGGGATTT TGAATAAGAGAGCCGTGGAGACTTCAGAGATGGAAAGGCCGATTCCAGATATAAGGACAGGGGATATAGTGGAGATCAAATTGGAAGTTCCTGAAAATAG GCGTAGACTGTCCATTTACAAAGGCATTGTCATATCTAAGCAGAATGCTGGTATCCACACAACTATTAGAATTCGGAGGATTATTGCTGGTATAGGAGTT GAGATCGTATTCCCACTCTACTCGCCAAATATCAAGGAGATAAAAGTAATTAAGCACAGGAAGGTTAGGAGGGCAAGATTGTATTATCTGAGGGACAAGC TTCCCAGACTGTCCACTTTTAAATGA
AA sequence Show only first row Show all	>Potri.001G152200.2 pacid=42788077 polypeptide=Potri.001G152200.2.p locus=Potri.001G152200 ID=Potri.001G152200.2.v4.1 annot-version=v4.1 MGSKILPQALAVIPRSPTQFPVPKKLGFSSTINRSSYLSNSASSSRFSVSRVSSTSLSSNLEAFFKDFSRQSFVTRAESESGGGEVVEETENVEEEVVVE GSEEEEVQAEAEVEGAVKEPRKPRVKLGDIIGILNKRAVETSEMERPIPDIRTGDIVEIKLEVPENRRRLSIYKGIVISKQNAGIHTTIRIRRIIAGIGV EIVFPLYSPNIKEIKVIKHRKVRRARLYYLRDKLPRLSTFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17560			Ribosomal protein L19 family p...		Potri.001G152200 [exp]	0	1
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G071300 [exp]	1.73	0.9883
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Potri.007G106500 [exp]	3.00	0.9873
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.003G121600 [exp]	3.16	0.9881
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	3.46	0.9850
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.001G099300 [exp]	6.70	0.9841
AT5G55570			unknown protein		Potri.011G085501 [exp]	7.48	0.9816
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Potri.002G033300 [exp]	8.77	0.9797
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	8.94	0.9812	RBP29.1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	9.16	0.9831
AT2G35830			unknown protein		Potri.010G217500 [exp]	9.27	0.9683

Compare expression of checked genes

Potri.001G152200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.