Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT4G17550	692 / 0	AtG3Pp4	glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
AT3G47420	551 / 0	AtG3Pp1, ATPS3	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
AT1G30560	516 / 4e-180	AtG3Pp3	glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1)
AT2G13100	488 / 2e-169	AtG3Pp5	glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
AT4G25220	483 / 8e-167	AtG3Pp2, RHS15	glycerol-3-phosphate permease 2, root hair specific 15 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G082366 [exp]	851 / 0	AT4G17550	624 / 0.0	glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Potri.001G124200 [exp]	566 / 0	AT3G47420	711 / 0.0	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Potri.003G109300 [exp]	554 / 0	AT3G47420	694 / 0.0	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Potri.018G115000 [exp]	514 / 2e-179	AT2G13100	699 / 0.0	glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10004358 [exp]	748 / 0	AT4G17550	725 / 0.0	glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Lus10040154 [exp]	744 / 0	AT4G17550	734 / 0.0	glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Lus10031153 [exp]	531 / 0	AT3G47420	695 / 0.0	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10027210 [exp]	526 / 0	AT3G47420	705 / 0.0	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10040002 [exp]	486 / 3e-168	AT2G13100	708 / 0.0	glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
Lus10038923 [exp]	454 / 4e-157	AT3G47420	586 / 0.0	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10027211 [exp]	340 / 1e-113	AT3G47420	454 / 9e-159	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10031729 [exp]	118 / 1e-31	AT3G47420	155 / 2e-46	Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0015 [poplar] [flax]	MFS	PF00083 [poplar] [flax]	Sugar_tr	Sugar (and other) transporter

Representative CDS sequence

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>Potri.001G152300.1 pacid=42791876 polypeptide=Potri.001G152300.1.p locus=Potri.001G152300 ID=Potri.001G152300.1.v4.1 annot-version=v4.1

ATGGCTAATAATTTAGACGCAATGAGGAAAATCCCACCTGGGATTTGGCTTATAAGGAAAATAAGAGGCAAAGACTGTAGTCTTAAGACACATAGATACA

TGGTTTTGTTGGTTACTTTCATTGCATATACTAGTTACCATGCATCAAGAAAGCCCAGTAGCATAGTCAAGAGTGCATTGGATCCTGAACCCAACAAGAC

CACAAATGTCTACCCTTGGCCAATTGGAAGTGTCTTTGTTAAAGATGAATTCTTGGGTGAAAACAAGGATAAGTTTGGATATAAAGGCTGGGAACCATTT

AATGGGAAAGATGGGACAGAGAAATTGGGTTTGATTGATGTTGCATTTCTTGCTTGTTATTCTTTGGGAATGTTTGGTGCTGGCCATTTAGGTGATACAT

TGGATTTGAGGTTGTTTTTGACTTCTGGGATGATTGGTAGTGGAATTTTTGTGGGGTTATTTGGTATGGGATACTTTTGGAACATTCATGTTTTCGGGTT

TTATTTGGTTATGCAAATGGTTGCTGGGTTGTTTCAAGCCACAGGTTGGCCTTCTGTTGTGGCTGTGATTGGTAATTGGTTTGGGAAAAGGAAGAGAGGG

TTAATAATGGGTATTTGGAATGCACATACTTCAGTCGGGAATATTACTGGCTCTCTTATTGCTGCAAGTGTTTTGGAGTACGGTTGGGGATGGTCTTTTA

TTGCTCCTGGCACATTTATTGCAATATCAGGGATATTGGTTTTCTTGTTTTTAGCTGCTTATCCTGAGGATATTGGATTTCCTTGCCCAAATGGCCCAGC

AACAAGGGCAGAGGCAGTGCCTTGCGATGTAGAAGCTCAGACACAGAATGAAGGTACCGTGGAGGGGAAGAGTGCTCCCATCCGAGACAGATCTGGGGCT

AGGAGAAGTGTTGGGCTTCTTGAAGCTTGCTTGATACCAGGAGTGATACCATTTTCATTTTGCCTGTTCTTCTCCAAGCTCGTGGCTTACACGTTTTTGT

ATTGGTTGCCGTTTTATTTGAGTCAGACAGAAATTGGTGGAGAATATATGTCTGTGAAGTCAGCTGGAAATCTCTCAACCCTGTTTGATGTGGGGGGCAT

TGTTGGTGGAATTCTTGCTGGCCATATTTCTGATAAACTTAGAGCTCGGGCGATTACAGCAGCCAGTTTCATGTATGCTGCAATTCCTTCTATGCTTCTA

TACCGCTTATATGGGAATCTATCACGGACTGTGAACATTGTACTCATGATGATTGCTGGCTTATTCATAAATGGGCCATATGCACTTATCACAACTGCAG

TATCTGCTGACCTCGGCACGCACAGTTCTCTTAGAGGGGATTCTCGAGCCCTGGCAACAGTGACTGCCATAATTGATGGTACTGGATCAATTGGTGCAGC

TCTTGGTCCTCTTCTCACTGGGTTCCTTTCAACAAAAGGATGGGATACAGTTTTTGTGATGCTGATGCTCGGTGCTCTTATTGCGGGGCTTCTTTTATCA

CGTCAGGTTGTGGTTGAAATTAATGAGAAAACTTGTAAATCGATGCGTTCATCCAGTGGACAGCAAAGTTCTGAAGCTCCTCCATCTCAACCACTTCTAA

GTGATCAAAGATGA

AA sequence

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>Potri.001G152300.1 pacid=42791876 polypeptide=Potri.001G152300.1.p locus=Potri.001G152300 ID=Potri.001G152300.1.v4.1 annot-version=v4.1

MANNLDAMRKIPPGIWLIRKIRGKDCSLKTHRYMVLLVTFIAYTSYHASRKPSSIVKSALDPEPNKTTNVYPWPIGSVFVKDEFLGENKDKFGYKGWEPF

NGKDGTEKLGLIDVAFLACYSLGMFGAGHLGDTLDLRLFLTSGMIGSGIFVGLFGMGYFWNIHVFGFYLVMQMVAGLFQATGWPSVVAVIGNWFGKRKRG

LIMGIWNAHTSVGNITGSLIAASVLEYGWGWSFIAPGTFIAISGILVFLFLAAYPEDIGFPCPNGPATRAEAVPCDVEAQTQNEGTVEGKSAPIRDRSGA

RRSVGLLEACLIPGVIPFSFCLFFSKLVAYTFLYWLPFYLSQTEIGGEYMSVKSAGNLSTLFDVGGIVGGILAGHISDKLRARAITAASFMYAAIPSMLL

YRLYGNLSRTVNIVLMMIAGLFINGPYALITTAVSADLGTHSSLRGDSRALATVTAIIDGTGSIGAALGPLLTGFLSTKGWDTVFVMLMLGALIAGLLLS

RQVVVEINEKTCKSMRSSSGQQSSEAPPSQPLLSDQR

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Potri.001G152300 [exp]	0	1
AT3G07660			Kinase-related protein of unkn...		Potri.011G079800 [exp]	57.02	0.5625

Potri.001G152300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.001G152300 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.001G152300 coexpression network