Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02890 210 / 6e-65 HXXXD-type acyl-transferase family protein (.1) AT4G29250 56 / 2e-08 HXXXD-type acyl-transferase family protein (.1) AT3G23840 53 / 1e-07 HXXXD-type acyl-transferase family protein (.1) AT4G13840 49 / 3e-06 HXXXD-type acyl-transferase family protein (.1) AT5G16410 46 / 2e-05 HXXXD-type acyl-transferase family protein (.1) AT4G24510 44 / 0.0002 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT1G78990 43 / 0.0004 HXXXD-type acyl-transferase family protein (.1) AT1G27620 42 / 0.0008 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082100 [exp] 500 / 1e-178 AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1) Potri.018G032700 [exp] 64 / 8e-11 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.005G052200 [exp] 59 / 2e-09 AT4G29250 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 55 / 4e-08 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.013G039700 [exp] 54 / 8e-08 AT4G29250 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 52 / 4e-07 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 51 / 6e-07 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 51 / 7e-07 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G230900 [exp] 47 / 2e-05 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000592 [exp] 234 / 5e-74 AT5G02890 217 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10011003 [exp] 231 / 1e-72 AT5G02890 213 / 5e-66 HXXXD-type acyl-transferase family protein (.1) Lus10004360 [exp] 197 / 1e-59 AT5G02890 220 / 1e-68 HXXXD-type acyl-transferase family protein (.1) Lus10040156 [exp] 189 / 3e-56 AT5G02890 213 / 6e-66 HXXXD-type acyl-transferase family protein (.1) Lus10028335 [exp] 58 / 5e-09 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 54 / 1e-07 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 45 / 8e-05 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10021395 [exp] 42 / 0.0006 AT5G48930 219 / 1e-66 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10024278 [exp] 42 / 0.001 AT1G27620 550 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G152500.1 pacid=42789918 polypeptide=Potri.001G152500.1.p locus=Potri.001G152500 ID=Potri.001G152500.1.v4.1 annot-version=v4.1 ATGGCAATGACCCAGGTCGCTAGTGAGTTTGCACGTAAGGTACAAATTGAAGCTGTGCAAACAGTGTCACCCTCCTCGGTGACTGATCCAAGGGAGATAT GCCTGGTGTCAGTGAAGGACCCTGTTGGCTCAAATATTTTCCGGGGGTGCCTAAACATAGTCCTCTACTACAATAAAGCCGGGGAGGAGGATTCCGGTTG GCTAGTTGCCGGATGGATTAAGGAGTCCCTAGGGAGGGTATTGAGTGACCAACCGATGCTTGGTGGACGGCTATGGAGAGGCGAAGATGGTAATGGAGAA CTAGAGATGGTGTCAAATGATAGCGGAGCTAGACTTGTTGAGGCAAAGATTACAATGACTTTGCGAGAGTTTCTTGGTTTGGAAGAAAGGGAAAAATTAG AAGCTGAACTCGTCATCTGGAAGGATATTGATGAAAAGAATCCCCAATTCTCTCCACTGCTCTATGTTCAGGTCACTAACTTCCAGTGTGGTGGGTACTC AATTGGGATTAGCTCTAGCCTTCTTTTGGCAGACCTTTTAATCATGGACAACTTCCTCATGAGGTGGGCAAGTATTCAAAAGAATTTACTGTCCATCAAT GGTGCTCTCAAGATGCCCATATTCTACCTCCCCAATCTCAAAAGCACTAGCCTATCTCCTAATAGCACTATTATCCCCACGCCTAGCGAACGCAGTGGGC AAACAAAGATATTCAAGATCTCAGGCGATACCGAGATTGAGGGTGCGAAGAACGAATTGTTCAAGAGGGCTGCATCACTTTGCATTGAGAAGGCAGAGCG CGAACTGGGCAGTGAAATGCCAGCAGGGTTTTCTTTGTTTGTGAAAGAATCTTCTAACGTTATAAGGGTCCAGAATTGCAAGAAAAATGAGCTTGTCAAG TCTCATCTAAACCTGAGCACTCAAGTCAACTCTTCGAGTTTGGATGATTCAGGGATCAAAGAACTAGCTTTCCAAGATGGCAACGAACCCGTTCATGTTT CTTGTTGGATTGGATCGGTGGCTGATGGACTTGTAGTAGCAACTCCATCTCCTAATGGGGATACTTCCTCTGATATCAACGTTATAGTTACAATCCCTGA AGGAAAGGAGTTTTAA
AA sequence Show only first row Show all	>Potri.001G152500.1 pacid=42789918 polypeptide=Potri.001G152500.1.p locus=Potri.001G152500 ID=Potri.001G152500.1.v4.1 annot-version=v4.1 MAMTQVASEFARKVQIEAVQTVSPSSVTDPREICLVSVKDPVGSNIFRGCLNIVLYYNKAGEEDSGWLVAGWIKESLGRVLSDQPMLGGRLWRGEDGNGE LEMVSNDSGARLVEAKITMTLREFLGLEEREKLEAELVIWKDIDEKNPQFSPLLYVQVTNFQCGGYSIGISSSLLLADLLIMDNFLMRWASIQKNLLSIN GALKMPIFYLPNLKSTSLSPNSTIIPTPSERSGQTKIFKISGDTEIEGAKNELFKRAASLCIEKAERELGSEMPAGFSLFVKESSNVIRVQNCKKNELVK SHLNLSTQVNSSSLDDSGIKELAFQDGNEPVHVSCWIGSVADGLVVATPSPNGDTSSDINVIVTIPEGKEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.001G152500 [exp]	0	1
AT3G48675			Protein of unknown function (D...		Potri.006G062100 [exp]	4.69	0.9806
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Potri.007G121500 [exp]	13.96	0.9175
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.009G045200 [exp]	14.28	0.9777	6
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.012G047700 [exp]	18.08	0.9768
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G029000 [exp]	20.78	0.9747
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Potri.008G181600 [exp]	22.13	0.9656
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	24.59	0.9734	Pt-RD22.1
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010700 [exp]	25.09	0.9734
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Potri.010G052500 [exp]	26.66	0.9006
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243600 [exp]	26.94	0.9734

Compare expression of checked genes

Potri.001G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.