Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35658 80 / 2e-21 unknown protein AT5G07490 65 / 7e-15 unknown protein AT5G61630 61 / 2e-13 unknown protein AT5G20045 49 / 2e-09 unknown protein AT4G16840 42 / 2e-06 unknown protein AT1G07860 40 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081900 [exp] 117 / 2e-36 AT2G35658 84 / 3e-23 unknown protein Potri.001G080500 [exp] 67 / 1e-15 AT5G61630 155 / 2e-49 unknown protein Potri.008G015800 [exp] 56 / 5e-12 AT5G20045 57 / 3e-12 unknown protein Potri.008G015100 [exp] 52 / 1e-10 AT5G20045 52 / 3e-10 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011000 [exp] 70 / 7e-17 AT2G35658 74 / 5e-18 unknown protein Lus10000594 [exp] 67 / 2e-16 AT2G35658 79 / 1e-20 unknown protein Lus10032501 [exp] 66 / 2e-15 AT5G61630 129 / 2e-39 unknown protein Lus10042998 [exp] 63 / 4e-14 AT5G07490 117 / 2e-34 unknown protein Lus10019440 [exp] 40 / 9e-06 AT5G20045 63 / 9e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G152700.2 pacid=42790219 polypeptide=Potri.001G152700.2.p locus=Potri.001G152700 ID=Potri.001G152700.2.v4.1 annot-version=v4.1 ATGCAGAGATCATCGAACAGTTCCAGAGTGACTGAAGAGTTGTTCAAGAACGCAAGCACAGACACAGATCAACAAGAACTTCCCACGTATGATCCACTTT CTCACATTGGAAAGAAGGAAAAGTCTCGTCTCAGATCTGCTGAGTATGCAATCCATGTCATCCCTCTCCTTCTTGTTCTCTGTGCCATCATCCTCTGGTT CTTCTCCAACTCCCCAGAGCCAAGGATTTGA
AA sequence Show only first row Show all	>Potri.001G152700.2 pacid=42790219 polypeptide=Potri.001G152700.2.p locus=Potri.001G152700 ID=Potri.001G152700.2.v4.1 annot-version=v4.1 MQRSSNSSRVTEELFKNASTDTDQQELPTYDPLSHIGKKEKSRLRSAEYAIHVIPLLLVLCAIILWFFSNSPEPRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35658			unknown protein		Potri.001G152700 [exp]	0	1
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.004G065600 [exp]	12.32	0.8928
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.018G032500 [exp]	13.78	0.8960
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	18.43	0.8951
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G206000 [exp]	18.73	0.8702
AT3G03890			FMN binding (.1.2)		Potri.019G035200 [exp]	19.59	0.8911
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	27.05	0.8943	LJLCB2.1
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.006G267300 [exp]	35.24	0.8861
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	36.48	0.8850	VFCYSPRO.1
AT4G19390			Uncharacterised protein family...		Potri.004G234600 [exp]	37.94	0.8864
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	42.57	0.8887

Compare expression of checked genes

Potri.001G152700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.