Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05380 340 / 4e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G14920 338 / 2e-103 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36740 315 / 7e-95 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 292 / 1e-86 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14980 259 / 5e-75 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 207 / 8e-57 PHD finger transcription factor, putative (.1) AT2G36720 141 / 4e-35 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 138 / 5e-34 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 134 / 8e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G63900 131 / 2e-32 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087700 [exp] 365 / 4e-112 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 353 / 9e-108 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 341 / 3e-103 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 336 / 3e-101 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 297 / 9e-88 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G072600 [exp] 256 / 1e-73 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 251 / 8e-73 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G120200 [exp] 140 / 7e-35 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 138 / 6e-34 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010562 [exp] 353 / 4e-108 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10006110 [exp] 353 / 9e-108 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 338 / 2e-101 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 320 / 2e-95 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 248 / 2e-70 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 230 / 6e-66 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 226 / 3e-63 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10007741 [exp] 213 / 6e-60 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 207 / 1e-58 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 176 / 1e-46 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G153200.2 pacid=42790064 polypeptide=Potri.001G153200.2.p locus=Potri.001G153200 ID=Potri.001G153200.2.v4.1 annot-version=v4.1 ATGAACATCAACCGTAACGCTCCAATCATTATTACTCGGTACAGCAATAGCTACAAGATACTTTCTTGCGTACCAAAAACACAAATTCTTGAAGCAAAAC CAGGGTTCTTGAAATCTAGAAACATGGCTTATAAGTTAAGGGCTAGAAAACAAAAGAGGCCGTACGTCAGCTGTGATGATGATGATGATGATGATGGACA TGAAAGTGATTCTAGCAGGAGAATGGATCCTGATTTTACCAGGAACGTTAGACCGCGAAGAAGTAACACTATGATTACTGAAAGTTCGGAGCAGAGAAGG GCGGGTCGCCCTCCTAAGAGGACGAGGAAATCAACTCCTTCAGCCGGAGAAGCAAGTACTTCCGGCAGCAAACCTGCAGAATATGTAGCGAGAACTATAA TGTCAAGGTTGATAGACCATGGCATGATCATCGAGAACGAGAAAATTTATTATGTTGCTGATAGGGAGGGGGATTCGGATGCTCGCAAACAAAGCAAAAA GGAGGTGCTGATGAAGGGAAGAGCAAGAAGAGAGGGTGTACGGTGTGAGTGCTGCAATGAAGTTATGACAGTGTGGGATTTTGAGACCCATGCCGGGAGT GTTTTACAAAGGCCATATGAACATATCCATGTTGCTCGAAGCAACAGCTCCCTCTTGCAGTGTCAGTTTGAAGTTTGGCAGAGCAATGTAGAGGTCGAGC GGCGCACCTTTAATGAGATTGTTCCCCGTAATGGCGCCTCCGATAAACACGATGATGCTTGCCTGATTTGTGCAGATGGAGGGGACTTGATCTGTTGCGA AAAGTGTTGGTCCACTTCCCATCTCAAATGTATGGGGTTGGAAAGGATTCCCCAAGGAGATTGGATTTGTCCCTACTGTGTGTGCAAGCACTGTAATAAA AACGACAAAGACCTGCAAACTTGCGTTCAATGTGATAAAAAATATCATTGCCAGTGTTTAGTTAGCAATAAGGAGTTGGATCTTAATGCCAGTGGCGAAA CCTTAGCATGTGATTCTCACTGCGGAGAGGTTTACGAGAAGCTTCAGAGCCTCGTAGGTGTGAAACATGAGTTAGAAGGGGGGTTCTGTTGGACTCTCCT CCAGCGGATGGAGCCAGACAACTTGGACTTCAAGGATCTTCATTTAATCACCGAATGCAATTCAAAAATTGCATTGGCCTGGGAGGTGCTGGACGAATGT TTCACGACAATCATTGATCGGCATACGCAGATCAATGTAGTTCAGAGTGTGGCTTATAGTCGAGGATCGAACCTCAACAGGATAAATTTTCGAGGCTTTT ATACTGCGATCCTGGAGAAGAACGATGACATCATTTCAGCTGCAACTATAAGAGTGCATGGGACCGATTTGGCTGAGATGCCTTTCATTGGAACTCGGCA CTTGTATAGGCAAAACGGGATGTCAAGAATGTTACTGGTTACTCTTGAATCTATTTTTTCAGTTATGGGGGTTGAGCATCTAATCATCCCATCAGTCCAG GAGCTCACTGAGATGTGGGAGGGGAAATGCGGGTTTTCCCCCATTGAGGATGCTGTTAGCCAAAAGATCACCAACTGGAACACCCTCACGTTTCCAAGTG CAGTCAGGCTGCAAAAGGCCCTTCTCAGCACCCCAGCTAGTAGTTCTTCTGCAGTCATGAATGCGGACGTGGGCGTGGATGTGGATGAGGGTGTGGATAT GGTCAGTGATAACTGTGCAAAACTAGCTGGTCTAGATTTAAACCATGAATATATTGAATCTGGAGATGAAGAGGCAGAAGACAAGTGA
AA sequence Show only first row Show all	>Potri.001G153200.2 pacid=42790064 polypeptide=Potri.001G153200.2.p locus=Potri.001G153200 ID=Potri.001G153200.2.v4.1 annot-version=v4.1 MNINRNAPIIITRYSNSYKILSCVPKTQILEAKPGFLKSRNMAYKLRARKQKRPYVSCDDDDDDDGHESDSSRRMDPDFTRNVRPRRSNTMITESSEQRR AGRPPKRTRKSTPSAGEASTSGSKPAEYVARTIMSRLIDHGMIIENEKIYYVADREGDSDARKQSKKEVLMKGRARREGVRCECCNEVMTVWDFETHAGS VLQRPYEHIHVARSNSSLLQCQFEVWQSNVEVERRTFNEIVPRNGASDKHDDACLICADGGDLICCEKCWSTSHLKCMGLERIPQGDWICPYCVCKHCNK NDKDLQTCVQCDKKYHCQCLVSNKELDLNASGETLACDSHCGEVYEKLQSLVGVKHELEGGFCWTLLQRMEPDNLDFKDLHLITECNSKIALAWEVLDEC FTTIIDRHTQINVVQSVAYSRGSNLNRINFRGFYTAILEKNDDIISAATIRVHGTDLAEMPFIGTRHLYRQNGMSRMLLVTLESIFSVMGVEHLIIPSVQ ELTEMWEGKCGFSPIEDAVSQKITNWNTLTFPSAVRLQKALLSTPASSSSAVMNADVGVDVDEGVDMVSDNCAKLAGLDLNHEYIESGDEEAEDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05380			Acyl-CoA N-acyltransferase wit...		Potri.001G153200 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.010G042400 [exp]	8.48	0.8981	Pt-INO.2
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G103850 [exp]	13.41	0.8816
					Potri.001G459001 [exp]	14.00	0.8947
AT1G04645			Plant self-incompatibility pro...		Potri.018G148366 [exp]	14.38	0.8915
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Potri.006G022200 [exp]	14.69	0.8929	Pt-CYP709.2
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.002G029400 [exp]	16.58	0.8812
					Potri.015G076300 [exp]	18.70	0.8699
AT2G19210			Leucine-rich repeat transmembr...		Potri.001G191701 [exp]	20.49	0.8536
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Potri.002G088200 [exp]	21.33	0.8748
					Potri.004G022300 [exp]	24.00	0.8636

Compare expression of checked genes

Potri.001G153200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.