Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16800 346 / 1e-119 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16210 107 / 5e-27 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT5G43280 96 / 1e-22 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT1G60550 92 / 4e-21 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT3G06860 87 / 1e-18 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 78 / 8e-16 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G24360 61 / 4e-10 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G13360 59 / 1e-09 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 45 / 5e-05 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080800 [exp] 351 / 6e-122 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 107 / 4e-27 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.008G104500 [exp] 106 / 6e-27 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G146400 [exp] 104 / 3e-26 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G329900 [exp] 93 / 2e-21 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Potri.008G220400 [exp] 88 / 5e-19 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 87 / 1e-18 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 72 / 8e-14 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.006G156350 [exp] 68 / 1e-12 AT4G13360 608 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010994 [exp] 362 / 2e-125 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10000420 [exp] 207 / 6e-66 AT4G16800 156 / 1e-46 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10011336 [exp] 99 / 5e-24 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10016920 [exp] 98 / 8e-24 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10002583 [exp] 98 / 1e-23 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10013023 [exp] 97 / 6e-23 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10029142 [exp] 97 / 8e-23 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10037777 [exp] 91 / 3e-20 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10037495 [exp] 79 / 7e-16 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 78 / 7e-16 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00378 [poplar] [flax] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.001G153300.3 pacid=42792803 polypeptide=Potri.001G153300.3.p locus=Potri.001G153300 ID=Potri.001G153300.3.v4.1 annot-version=v4.1 ATGGGTACTTTCCCTGCTCTAACAAGATCACTGGGTCATTACTGTATTAAAAAGTCGAGATCCTTTAACTTTCCGAATCCTCACGTTTACAGCAACGGTC ACCAGTACCAAACCCATAGAACCCTCCTCATCTTGGACTCCCTGTCCTCTGAATCAGTCAGGCTTCGAAGATTGTCAGATTCGGATTCTGGGATTGTCGA GGTTAATTTGGATAGGCCTGCAGCGAAAAATTCAATTGGCAAGGAAATGTTAAGAGGGTTACGCAATGCTTTTGAAACAATTGAAAGCGATGTCTCTGCT CAGGTTGTTTTGATTTGCAGTTCGGTTCCGAAGGTTTTCTGTGCTGGTGCTGATTTGAAGGAGCGCAAGACAATGACTCCATCTGAAGTTCAAGATTTTG TGAACTCATTGCGATCTACATTCTCACTCATAGAGGCACTCTATGTTCCTACTGTTGCTGTTATTGAAGGAGCAGCATTAGGTGGTGGACTTGAAATGGC TTTATCGTGTGATCTTCGCATATGTGGAGAAGATGCAGTATTGGGCTTGCCAGAAACAGGACTTGCCATAATTCCTGGTGCAGGTGGGACACAAAGACTT CCTAGGTTGGTTGGAAAATCACTAGCAAAGGAACTTATATTTACTGGCCGCAAGATTGACGGCAGAGAGGCCATGTCAATGGGGCTTGTCAATTACTCTG TCCCTGCTGGTGAAGCTCATTCAAAAGCACTTGAAATTGCTCGGGAGATTATTCAGAAGGGTCCAATAGCAATTAGGATGGCAAAAAAGGCCATCAATGA GGGACTTGAGATAGATTTACCATCAGCTTTGGAATTGGAAGAAGAGTGCTATGAACAGATCTTGAACACAAAAGATCGTTTGGAAGGCTTGGCAGCATTT GCTGAAAAGCGGAAACCAAGGTACAGAGGGGAATAA
AA sequence Show only first row Show all	>Potri.001G153300.3 pacid=42792803 polypeptide=Potri.001G153300.3.p locus=Potri.001G153300 ID=Potri.001G153300.3.v4.1 annot-version=v4.1 MGTFPALTRSLGHYCIKKSRSFNFPNPHVYSNGHQYQTHRTLLILDSLSSESVRLRRLSDSDSGIVEVNLDRPAAKNSIGKEMLRGLRNAFETIESDVSA QVVLICSSVPKVFCAGADLKERKTMTPSEVQDFVNSLRSTFSLIEALYVPTVAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRL PRLVGKSLAKELIFTGRKIDGREAMSMGLVNYSVPAGEAHSKALEIAREIIQKGPIAIRMAKKAINEGLEIDLPSALELEEECYEQILNTKDRLEGLAAF AEKRKPRYRGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16800			ATP-dependent caseinolytic (Cl...		Potri.001G153300 [exp]	0	1
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Potri.010G242100 [exp]	15.87	0.7866
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	26.38	0.7296
AT5G37360			unknown protein		Potri.013G050300 [exp]	46.73	0.7691
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.005G175600 [exp]	50.64	0.7693
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015200 [exp]	65.03	0.7240
AT2G04340			unknown protein		Potri.014G169500 [exp]	84.55	0.7009
AT2G25320			TRAF-like family protein (.1)		Potri.006G065300 [exp]	89.96	0.7556
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.007G105100 [exp]	109.72	0.7168
ATCG00020		ATCG00020.1, PS...	photosystem II reaction center...		Potri.005G154836 [exp]	155.94	0.6982
AT5G44520			NagB/RpiA/CoA transferase-like...		Potri.011G155500 [exp]	157.60	0.7310

Compare expression of checked genes

Potri.001G153300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.