Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47240 417 / 1e-145 ATNUDT8 nudix hydrolase homolog 8 (.1) AT5G47650 263 / 1e-86 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 244 / 2e-79 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04430 234 / 5e-75 ATNUDT5 nudix hydrolase homolog 5 (.1) AT4G12720 221 / 4e-70 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT2G04450 216 / 5e-68 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT2G04440 125 / 4e-34 MutT/nudix family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080400 [exp] 644 / 0 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 346 / 5e-118 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1) Potri.001G368000 [exp] 285 / 1e-94 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 265 / 4e-87 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 266 / 5e-87 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 261 / 5e-85 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 257 / 2e-84 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 253 / 4e-82 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 247 / 4e-79 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040169 [exp] 445 / 5e-157 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 447 / 9e-154 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10012319 [exp] 263 / 2e-86 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 259 / 1e-84 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10038780 [exp] 258 / 3e-83 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 257 / 3e-83 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012320 [exp] 240 / 2e-77 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 239 / 4e-77 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10021278 [exp] 43 / 0.0001 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 41 / 0.0008 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.001G154300.1 pacid=42790583 polypeptide=Potri.001G154300.1.p locus=Potri.001G154300 ID=Potri.001G154300.1.v4.1 annot-version=v4.1 ATGACTCAATTGAAGTTTTTCGATTTCAAATCAGCATCTCTGTCTGAGAAAGCAGCTCTCATGGGAAGGGCAGGATCAAGCCCGTTTTCGAGTCTCGGGC ATTCAGTTGGTGTTAGATTTTCTCAAGAGTTCAGTTCTTGCAGAGGTTCAGGAGTATTTACGAAGGCTTCTTATTCGAGCAGTTCAAATGGTACATATAT GTCAAAGAGGGCTTTAAGCTCAGTTGACAAAGAAAAATTTGCAGCGGAGAATTACTTCTATCAGATTAATGGAACAAGTGTTTCTAGTTCAAGTCTGTTT TCCAGAAATGTGAAAGCACTTGATGCCTGCGATGATGAGTATGGGGGAGTTGTTGTCGATCCAGATAGGCTACCGGTTAATCCAGATGCCTTCGCTTCAA TCCTCCGTTTTTCCCTCTCTCATTGGAAAATGAAGGGAAAGAAGGGAATTTGGCTTAAGTTGCCCCTGGAACGATCAGAGCTTGTTCCATTTGCTGTGAA GGAAGGTTTCCAGTATCACCACGCAGAACGAGGATATGTGATGTTGACTTACTGGATTCCTGAAGGACCTTGTATGCTTCCCACTAATGCTACACATCAA GTAGGTGTTGGGGGATTTGTGATCAATGACAAAAACGAGGTTCTTGTAGTTCAAGAGAAATTCTATGCTCCATCATTTGCTGATCTTTGGAAAATACCGA CTGGTTTTATTCTCGAGTCAGAAGAGATTTACTCTGGAGCTGTAAGAGAAGTCAAGGAGGAAACTGGTGTTGATACTGAGTTTGTGGAAGTTATAGCATT CAGGCATGCTCACAATTTGGCTTTCGACAAGTCAGATTTGTTCTTTGTTTGTATGCTGAAACCCTTGTCAGCCCAGATAAAGGTTGATGATCTTGAAATC CAAGCAGCCAAATGGATGCCCCTTGTTGAGTTTGTGGCGCAGCCGCTAATCCAAGAAGATGGCATGTTCAAGAAGATCATTGACATTTGCATTGCCCGCC TAGGGAAACATTACTGTGGACTATTACCTCATCAAGTAGTTTCCAAATTTGATGGCAGGCCTTCCTGCCTGTACTACAACGTAATCGACGATCAAGATGT CAACTGCAAAGGCAATTGA
AA sequence Show only first row Show all	>Potri.001G154300.1 pacid=42790583 polypeptide=Potri.001G154300.1.p locus=Potri.001G154300 ID=Potri.001G154300.1.v4.1 annot-version=v4.1 MTQLKFFDFKSASLSEKAALMGRAGSSPFSSLGHSVGVRFSQEFSSCRGSGVFTKASYSSSSNGTYMSKRALSSVDKEKFAAENYFYQINGTSVSSSSLF SRNVKALDACDDEYGGVVVDPDRLPVNPDAFASILRFSLSHWKMKGKKGIWLKLPLERSELVPFAVKEGFQYHHAERGYVMLTYWIPEGPCMLPTNATHQ VGVGGFVINDKNEVLVVQEKFYAPSFADLWKIPTGFILESEEIYSGAVREVKEETGVDTEFVEVIAFRHAHNLAFDKSDLFFVCMLKPLSAQIKVDDLEI QAAKWMPLVEFVAQPLIQEDGMFKKIIDICIARLGKHYCGLLPHQVVSKFDGRPSCLYYNVIDDQDVNCKGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.001G154300 [exp]	0	1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.013G040700 [exp]	5.65	0.7471	BZO2.2
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.003G198301 [exp]	7.74	0.6713
AT2G20830			transferases;folic acid bindin...		Potri.013G145600 [exp]	11.13	0.7108
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Potri.013G112500 [exp]	17.32	0.6675	Pt-CDPK2.4,CPK4
AT3G25400			unknown protein		Potri.008G168700 [exp]	27.11	0.6512
AT5G01750			Protein of unknown function (D...		Potri.016G130500 [exp]	38.88	0.6461
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.007G058500 [exp]	38.98	0.6075
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	161.66	0.5184
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	186.90	0.5255	ARP8.2,ARP908

Compare expression of checked genes

Potri.001G154300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.