Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35680 379 / 9e-132 Phosphotyrosine protein phosphatases superfamily protein (.1) AT5G56610 267 / 2e-89 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT3G23610 46 / 8e-06 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G10940 45 / 4e-05 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT3G06110 40 / 0.0007 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080000 [exp] 585 / 0 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.014G045500 [exp] 377 / 1e-131 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 371 / 6e-129 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G033000 [exp] 45 / 2e-05 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.008G020500 [exp] 44 / 5e-05 ND / Potri.010G238700 [exp] 43 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004376 [exp] 427 / 6e-151 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10040174 [exp] 421 / 1e-148 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10012928 [exp] 302 / 4e-102 AT5G56610 294 / 5e-99 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10034998 [exp] 251 / 2e-82 AT5G56610 247 / 1e-82 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10021940 [exp] 50 / 3e-07 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034214 [exp] 45 / 5e-05 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 44 / 6e-05 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10034033 [exp] 42 / 0.0001 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10043195 [exp] 43 / 0.0004 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.001G154700.1 pacid=42792250 polypeptide=Potri.001G154700.1.p locus=Potri.001G154700 ID=Potri.001G154700.1.v4.1 annot-version=v4.1 ATGATAATTGAGGAATTGAGTGGAGGTGAGTTGGAAAGAGAGAAGGGGGGGAAGGAATTGTGTGTAGGAAGTGCTAAGGAGGAGAGTGAAGGTGTTATTG TGTGGGATGCGAAGCGGGTTTTTATTGGAGTCGGAGCTCGGGCTTTGTTTTACCCGACTTTGCTTTATAATGTTGTTAGGAACAAGGTCCAGGCTGAGTT TCGCTGGTGGGATAGAGTCCATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTTCTGATGTTCCATGCCTGAAGGGGCTTGGTGTTGGTGGAGTGATA ACACTGAACGAACCATATGAGACTTTGGTACCAACTTCTTTATACCATGCTTATGGCATTGACCATCTGGTGCTTCCTACAAGAGACTACTGCTTTGCTC CGTCCTTGAATGATATAAGCCAAGCTGTAGCATTCATTCATGAAAATGTATCATCTGGACAAACTACTTACGTTCATTGCAAAGCTGGCCGGGGACGCAG CACAACCATTGTTATATGCTACCTGGTGCACCACAAGCAGATGACACCTGAGGCTGCATATAAATATTTGAGGTCAATCCGACCAAGAGTGCTTCTAGCA TCTGCTCAATGGAAGGCTGTTAAGGAATATTATCATCTAAAGGTGAACACTAGTGATCACAACATCAAAATGACTGATATAGTTTTGGGAAGTCCAAAGC CAGCACTTTTGCAGGATCTGGTGCCTTTTGATGATGGCTGTGTAGTTGTTGTTACAGAAGCAGATCTTGATGGATACAAACCAAATCTTGAATCTGGGCC TGTGGGAAGTGAGATATGGGCTGATCTAAGTGTGGTCTGCCGTGTTCGAGTTGCCAGTCAGGCAGCTCTGGAAAGAATATCCTGCCTCTGGCTCCGCAGC CAGACTCACCAGAAGATTGTTGGGGAGCAATTAAACAGGAAGAACAGCTGCTCAATCATGGCAGATCACTTGGGAGCTATCAGTGTTGACATTCATGTGT ATTGA
AA sequence Show only first row Show all	>Potri.001G154700.1 pacid=42792250 polypeptide=Potri.001G154700.1.p locus=Potri.001G154700 ID=Potri.001G154700.1.v4.1 annot-version=v4.1 MIIEELSGGELEREKGGKELCVGSAKEESEGVIVWDAKRVFIGVGARALFYPTLLYNVVRNKVQAEFRWWDRVHEFILLGAVPFPSDVPCLKGLGVGGVI TLNEPYETLVPTSLYHAYGIDHLVLPTRDYCFAPSLNDISQAVAFIHENVSSGQTTYVHCKAGRGRSTTIVICYLVHHKQMTPEAAYKYLRSIRPRVLLA SAQWKAVKEYYHLKVNTSDHNIKMTDIVLGSPKPALLQDLVPFDDGCVVVVTEADLDGYKPNLESGPVGSEIWADLSVVCRVRVASQAALERISCLWLRS QTHQKIVGEQLNRKNSCSIMADHLGAISVDIHVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35680			Phosphotyrosine protein phosph...		Potri.001G154700 [exp]	0	1
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.005G011200 [exp]	5.65	0.8335
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Potri.001G025601 [exp]	6.32	0.8221
					Potri.003G220866 [exp]	6.70	0.8128
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.012G103100 [exp]	6.85	0.8363
AT2G20740			Tetraspanin family protein (.1...		Potri.019G101800 [exp]	9.00	0.8329
					Potri.019G038352 [exp]	9.16	0.7648
AT5G43430		ETFBETA	electron transfer flavoprotein...		Potri.008G165800 [exp]	14.07	0.7633
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081400 [exp]	15.90	0.7601
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.003G117000 [exp]	17.23	0.7905	Pt-PAK.1
AT2G28370			Uncharacterised protein family...		Potri.009G014600 [exp]	17.34	0.8016

Compare expression of checked genes

Potri.001G154700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.