Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47360 429 / 4e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 163 / 2e-43 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 157 / 5e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 157 / 1e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63230 146 / 7e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 150 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 148 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 145 / 3e-37 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 145 / 3e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G41170 143 / 3e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245400 [exp] 161 / 9e-44 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 152 / 4e-40 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 153 / 6e-40 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G117600 [exp] 149 / 1e-39 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 152 / 2e-39 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 150 / 2e-39 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034400 [exp] 150 / 2e-39 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 150 / 3e-39 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 150 / 4e-39 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019160 [exp] 528 / 0 AT5G47360 407 / 8e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034396 [exp] 522 / 0 AT5G47360 406 / 3e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 153 / 8e-40 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 153 / 1e-39 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 152 / 2e-39 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 148 / 2e-38 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 148 / 3e-38 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 146 / 1e-37 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 145 / 4e-37 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 145 / 4e-37 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G154901.3 pacid=42788474 polypeptide=Potri.001G154901.3.p locus=Potri.001G154901 ID=Potri.001G154901.3.v4.1 annot-version=v4.1 ATGTCACTTTTTTCATTAACTCGCCATTTCACCTTCTCAATCAAGCCCAAAACCCCCAAAATCTCAACTTTACACTTCGCTACCACTTCCCTGGGAGAGA AACTTGATGCCCATCTGCAAAACAGTCCTAACAACGTAGAGAAAACCCTCAATTCACTCGCACCTATTAAACTTGACACCAAATATGTCAACGACATCAT ACACAGATGGTCCCTTAATAACCTTCAATTGGGTCTTAGGTTTTTTATCTGGGCTGGTGATCAACCAAATTATAGGCATAATTTATATATCTATAATAAA GCATGTAGCTTGTTTAAGATTAAGCAAAACCCGCAAGTTATTTTGGATTTAATTGAGACTTATAAGCTGGAGAAGTGTGTGGTTTGTGTTGACACTTTTA AGGTTGTTTTGAGGCTGTGCAAAGCGGGTGGGCTCGCTGATGAGGCTTTAATGGTGTTAAAGAAAATGCCTGAATTTAATATACGTCCTGATACTACTGC TTATAATGTTGTTATTAGGTCGCTTTGTGAGAAGGGTGATGTGGATATGGCTAAAAAATTGATGGGAGAGATGGGTTTGATTGATCTTTATCCCGATATG ATAACATATGTCTCGATGATTAAAGGGTTTTGTGATGTGGGTAGATTGGAGGAGGCTTTTGCGTTGTTCCCAGTAATGAGTGTGCATGGCTGTTATCCTA ATGTAGTGGCATATTCAGCACTTCTTGATGGGATTTGTAGGTTTGGGATTGTTGAGAGGGCATTTGAGTTGTTAGCAGAGATGGAGAAGCAAGGTGAGGG ATGTTGTCCAAATGTTATCACGTACACCTCTGTGATTCAGAGTTTTTGTGAGCAAGGTAGAACAAAGGATGCACTGTCAGTTTTGGAATTAATGGAGGTT CGTGGGTGTGCTCCAAATCGTGTCACTGCTAGTGCTTGGATAAATGGTATTTGTACGAATGGCCAGCTACAGGATGTGTATAATTTTATCAAGAGAATTG TTGCGGGAGGTAGTGTTTCGATTGGTGACTGCTATAGTTCTCTTGTGGTGTGTTTGATAAAGATTAAGAAAGTGGAGGAAGCAGAGAAGACCTTTAGGAG GGCTTTATCTAGTGGGATGAAGCCTGATAGTTTGGCATGCAGTATGATGATTAGGGAGATTTGTTCGGAGAAACGAGTGCTTGATGGGTTTTGTTTATAT GAAGAAGTTGAGAAAACAGGATGCTTGTCTTCCATTGACATCGATATATATTCTATTCTTTTAGCTGGGCTTTGTCAACAAGGCCATTCAGCAGAAGCTG CAAGGCTTGCAAGATCGATGCTTGAAAAAAGAATTCCTCTCAGAGCTCCTCATGTTGAAAAAATAGTTGAACACCTGAAGAATTTTGGAGGGAAGGAGCT TGTAGCTGAATTAGTTAGCATGGTAAGGTGA
AA sequence Show only first row Show all	>Potri.001G154901.3 pacid=42788474 polypeptide=Potri.001G154901.3.p locus=Potri.001G154901 ID=Potri.001G154901.3.v4.1 annot-version=v4.1 MSLFSLTRHFTFSIKPKTPKISTLHFATTSLGEKLDAHLQNSPNNVEKTLNSLAPIKLDTKYVNDIIHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNK ACSLFKIKQNPQVILDLIETYKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGDVDMAKKLMGEMGLIDLYPDM ITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSALLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEV RGCAPNRVTASAWINGICTNGQLQDVYNFIKRIVAGGSVSIGDCYSSLVVCLIKIKKVEEAEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLY EEVEKTGCLSSIDIDIYSILLAGLCQQGHSAEAARLARSMLEKRIPLRAPHVEKIVEHLKNFGGKELVAELVSMVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47360			Tetratricopeptide repeat (TPR)...		Potri.001G154901 [exp]	0	1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.016G023100 [exp]	1.00	0.9353
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014300 [exp]	4.35	0.9109
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.002G239600 [exp]	4.58	0.9227
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	4.69	0.9335
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	5.47	0.9188
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.014G167800 [exp]	5.65	0.8960
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	5.91	0.9252
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	7.21	0.9304
AT1G36390			Co-chaperone GrpE family prote...		Potri.002G090000 [exp]	7.74	0.8968
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	10.19	0.8799

Compare expression of checked genes

Potri.001G154901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.