Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACX1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16760 1152 / 0 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 1128 / 0 ACX5 acyl-CoA oxidase 5 (.1) AT5G65110 272 / 1e-81 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 233 / 3e-67 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 214 / 2e-60 ACX6 acyl-CoA oxidase 6 (.1) AT3G51840 59 / 5e-09 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079200 [exp] 1296 / 0 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.007G090400 [exp] 268 / 6e-80 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 264 / 1e-78 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.013G123500 [exp] 228 / 2e-65 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 227 / 6e-65 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.016G118000 [exp] 69 / 4e-12 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 62 / 7e-10 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004745 [exp] 1206 / 0 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 1194 / 0 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 1122 / 0 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 1116 / 0 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10041711 [exp] 265 / 8e-79 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 227 / 6e-65 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10039894 [exp] 223 / 3e-63 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10024038 [exp] 204 / 6e-57 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10002177 [exp] 183 / 2e-50 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10027811 [exp] 64 / 2e-10 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [poplar] [flax] Acyl-CoA_dh PF01756 [poplar] [flax] ACOX Acyl-CoA oxidase CL0087 [poplar] [flax] PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0544 [poplar] [flax] AcylCoA_ox_dh_N PF14749 [poplar] [flax] Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G155500.1 pacid=42792542 polypeptide=Potri.001G155500.1.p locus=Potri.001G155500 ID=Potri.001G155500.1.v4.1 annot-version=v4.1 ATGAAAGGAGTGGATCACTTGGCTCACGAGAGGAACAAGACTGAGTTCGATGTGGATGCGATGAAGATCGTGTGGGCTGGTTCTCGCCACGCCTTTGAAC TCTCAGACCGCATGGCTCGTCTGGTCGCCTCCGATCCGGCGTTTCAAAAGGATGGCAGAACTCGGCTAGGGAGGAAGGAATTGTTCAAAAACACTTTGAG AAAAGCAGCTCATGCATGGAAACGTATCCTTGAGCTTCGCCTTACTGAAGAAGAGGCTGGGTGGCTAAGGAGTTTTGTGGATGAACCTTCTTTTACGGAT CTTCATTGGGGAATGTTTATACCTGCTATTAAAGGACAAGGCACTGATGAGCAGCAACAGAAGTGGTTGCCATTGGCATATAAGATGCAGATAATTGGCT GCTATGCACAAACTGAACTTGGTCACGGATCCAATGTTCAAGGGCTTGAAACAACTGCAACCTTCGATCCTGAGACGGATGAGTTTGTCATTCATAGTCC TACATTAACTTCATCCAAATGGTGGCCTGGAGGATTGGGTAAAGTTTCCACACATGCTATTGTTTATGCACGCCTTATAACCAATGGTCAAGAACATGGA GTGCATGGTTTTATTGTCCAGCTTAGGAGCCTGGATGATCACATGCCTCTTCCAGGCTTAACCATTGGTGATATTGGAATGAAATTCGGAAATGGGGCAT ACAACACCATGGATAATGGTGTATTGAAATTTGATCACATACGCATCCCAAGGAACCAGATGCTGATGAGAGTGCTGCAGGTCACAAGGGAAGGGAAATG TGTGCAATCCAATGTTCCACGGCAGTTGATTTACGGCACCATGGTGTTTGTGCGGCAAACAATTGTAGCTGATGCTTCTACTGCTTTATCTAGGGCAGTT TGTATTGCTACAAGGTATAGCGCTGTTCGCAGACAATTTGGTTCACAGGATGGTGGTATGGAGACTCAGGTGATTGATTACAAAACTCAGCAAAGTAGAC TCTTTCCTTTGCTGGCTTCTGCTTATGCATTCAGATTCGTTGGTGAATGGTTGAAATGGCTTTATACGGATGTGACCCAGAGGTTGCAAGCTAATGATTT TTCTACATTACCCGAGGCTCATGCATGTACTGCGGGTTTGAAATCTTTGACTACTACTGCCACTGCTGATGCTATTGAAGAATGTAGGAAACTTTGTGGT GGCCATGGTTATCTTTGTGCCAGTGGGCTTCCTGAATTGTTTGCAGTATATGTCCCTGCCTGTACATATGAAGGAGACAATGTTGTGCTCCTTTTACAGG TTGCAAGGTTTCTTATGAAGACTGTTTCTCAGCTTGGTTCTGGAAAAAAGCCTGTTGGAACAACAGCTTATTTGGGACGAGTCCAGGATCTCTTACAGTG TTGTTGTGATGTTCAAACGGCTGAGGATTGGTTAAAGCCTAGTGTAGTGCTGGAGGCATTTGAAGCCAGGTCTGCCAGGATGTGCGTTGCCCGTGCTCAA AATCTTAGCAAATTTGAAAATCCTGAAGATGGTTTTGCTGAACTCTCCGCTGATCTAGTTGAGGCTGCTGTTGCTCATTGCCAATTAATTGTTGTTTCCA AGTTCATTGACAAATTACAGCAAGATATACCAGGAAAGGGGGTGAATCAACAGTTGCAGAATCTATGCTACATCTATGCTTTAAACCTTCTTCACAAATA TCTGGGTGATTTCCTCTCCACTGGCTGCATTACCCCGAAGCAGGCTTCACTCGCAAATGATCAGCTGAGATCTTTGTATTCCAAGATCCGTCCCAATGCA ATTGCACTTGCTGACGCATTTAATTACACTGATCACTACCTTGGTTCGGTTCTCGGCCGCTATGATGGAAATGTGTATCCCAAACTTTATGAAGAAGCGT GGAAGGATCCTCTGAATGACTCGGTTGTGCCTGATGGCTACTATGAATATGTTCACCCTATGCTGAAGCAACAGCTCCGTAATGCAAGACTCTGA
AA sequence Show only first row Show all	>Potri.001G155500.1 pacid=42792542 polypeptide=Potri.001G155500.1.p locus=Potri.001G155500 ID=Potri.001G155500.1.v4.1 annot-version=v4.1 MKGVDHLAHERNKTEFDVDAMKIVWAGSRHAFELSDRMARLVASDPAFQKDGRTRLGRKELFKNTLRKAAHAWKRILELRLTEEEAGWLRSFVDEPSFTD LHWGMFIPAIKGQGTDEQQQKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPETDEFVIHSPTLTSSKWWPGGLGKVSTHAIVYARLITNGQEHG VHGFIVQLRSLDDHMPLPGLTIGDIGMKFGNGAYNTMDNGVLKFDHIRIPRNQMLMRVLQVTREGKCVQSNVPRQLIYGTMVFVRQTIVADASTALSRAV CIATRYSAVRRQFGSQDGGMETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADAIEECRKLCG GHGYLCASGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYLGRVQDLLQCCCDVQTAEDWLKPSVVLEAFEARSARMCVARAQ NLSKFENPEDGFAELSADLVEAAVAHCQLIVVSKFIDKLQQDIPGKGVNQQLQNLCYIYALNLLHKYLGDFLSTGCITPKQASLANDQLRSLYSKIRPNA IALADAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGYYEYVHPMLKQQLRNARL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.001G155500 [exp]	0	1	Pt-ACX1.2
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.007G031100 [exp]	1.41	0.8073
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	1.73	0.7922
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Potri.001G099400 [exp]	11.48	0.7965	Pt-ACS2.3,ACS1
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G101600 [exp]	16.43	0.7580
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.008G133400 [exp]	21.16	0.7173
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.016G117500 [exp]	32.40	0.7660	Pt-FAD3.5
AT2G39530			Uncharacterised protein family...		Potri.010G204700 [exp]	34.71	0.7681
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.009G002200 [exp]	39.94	0.7485
					Potri.001G202800 [exp]	43.72	0.7587
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.004G102500 [exp]	44.58	0.7657	MANG.1

Compare expression of checked genes

Potri.001G155500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.