Plant FIBer expression Database

Potri.001G155800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47400 778 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004740
[exp]
868 / 0 AT5G47400 829 / 0.0 unknown protein
Lus10007801
[exp]
866 / 0 AT5G47400 827 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14724 mit_SMPDase Mitochondrial-associated sphingomyelin phosphodiesterase
Representative CDS sequence
>Potri.001G155800.1 pacid=42789098 polypeptide=Potri.001G155800.1.p locus=Potri.001G155800 ID=Potri.001G155800.1.v4.1 annot-version=v4.1
ATGCACCCGCACTCGTACACCGTCGATTCCCTTTCCAAATCCCAAGACCTTGCCTCATCCATCTTCCACTCCTCCACTCCTCCTCAGATCTCCTCCGTCT
GCGCCTCCATCGACTCTTTCTTGCACTCTCACTCCCCCGATCAATCCCGCTGCTTCTTCTCCCTCGCCTTCCCTACTCTAATCCGCAAGCTCTACGGCTT
CGATGACTCAACGTCGCCGCCCAGCAAGCAATCTAGCGCAGGTGGATGGCTCGACATTATCCACCTAGCAAACGACCCCGCTTTAACTTCTAGGGTTTTC
AACTTCCTCTCTCCGAACAGCCTACTTTTCCAATCAATCTTCGCCGTTGATCGTCAATATTTAGTCAATTACGCGTTCCCAATCGAACGGTTGCCGGAGT
GGGCTCGGTTTATTCTATCAGGCGAAAAAGGTTGTCAGGTTTTAAACAATCTTTGCCCTCTTTTTAAAGATAAAGTAAAAGAAGATTCGATTAAAGGAGG
AGGATCTTTATATTATCAAGTACAATTAAATTTATTTGAATATTTCATGTTCTGGTTCGCTTATTACCCTGTTTGTAAAGGAAATAGCGATAATTTGAAA
AGTTTAGCAACTGAAAGACCAAAAAAGTTCAAATTAGAGAATTGGACATCTTCCATTCCGTGTTTTTCACATCCAAAACATGGAAGCGAGCGAAATGTGG
AGGGCAATGATGATCTTTATATGCGGCTATTGTATGCATATTTGCGTGCGTTTGTGCCTGTTTGTGATTTGAATTCACACCAGCCTTATCGTGGTTCGCT
TTTGCATTATGGGTATGGAAATGATGGGTCAGTTTTGTATAGAGCGGAGTTTTTTGTTGACGTGTTGGTGAATTATTGGTTGGTTGATAGTGATTTCTCG
CCGTTGAATGTTAATGTTTGCAAGTCATGGGGTTTGTCCTTTAAGTTGAGGTTGGTTCCAGGGGAGACCCCGCCGACACCAAATTTAGGTGAGGTGGTGA
AGTTGTTGGTTAAGTATTTGAATTTGAGTGCGAGTGCAGTGAAAGAAGGGATTGAACATTTTGAGAATCCATCTTGGAGTAGGGTTTCTTCTGAGAAATC
AAAGGATTTGGCTGCATCCATCAATAGCCCAATGCATGTGGTTGGCTCATGGAATGCTTGGATTCAGAGGCCGGCATATAGGTTTATTTTGAGGTCATTT
CTATTTTGTCCTATGGGGACTACAATTAAGAATGCTTCACAGGTGTTTTCTGTGTGGGTTACTTATTTGGAACCGTGGAAGATTGGTTTGGATAATTTTG
CAGAGCTTGATGCCATTATAGATGGGTCAGGGAACGATGTGAAGAAGGAAGGTGAGAAGAATGTAGAATGTGGCTATTCTTCTTCATGGCAGGGCTATGT
ACTGTCCAATTATCTATACTACAGTTCGTTGGTTATGCATTTTATTGGGTTTGCACACAAGTTTCTTCACACTGATCCTGAAATGATAGTCCAGATGGTA
TTGAAGGTGATAAAAATACTGACATCATCTAAAGAGTTGACTGATCTTATAAAGAATGTTGATACTGCTTTTCATTCGCGACAAGCTGGGTCTGGCAAAT
CAATGCTTAGTAGTTTATATGGATATATTCCTTTAATTCGTGAACAGTTGCAGGATTGGGAAGATGGTTTATGTGAGAGTGATGCTGATGGTTCTTTCCT
GCATGAGAATTGGAACAAAGATTTAAGGCTTTTTGGTGATGGAGAAGATGGTGGACAACAGCTGCTCCAGTTGTTCATATTGCGTGCTGAAGCTGAGTTG
CAAGCCAACTCCGGTGATAATCTTGCAGGCAACCTTCAGTGTATAGATTCATTAAAGTTGCAGGTAAGCTGTTTTTTTGGTGGCCATACTGTGAAACAGA
TCTCATTTACGCCAGAAGTAAAACATGTGCAATCACGGGATGAAATATTTAAGCCCAGGAGAGTTTTCAACCATGCATCGCACAATGTCAAATACAAGGG
TGACTGGATGAAGCGCCCCATTTCTGATGATGAGGTCGCATGGCTGGCAAAATTTCTTGTATGGCTATCAAGTTGGCTAAACGAGAATCTTGGGCTATAT
CAAGCAGAGAGAAGCAATGTTGATCCTAAATTGTCATATGTGGAGCCTCCAAGTGATGCAGGAAATGTGTGTGGATCCACAGAAATCATGAAGATGACAT
TATGTGCCGTTTGTTCTTGGTTTTTGATGTCGGGTGCTATGGTAGTGAGGCTAATGAGAAAGCACGGTGCAAGGGTGAACCTCAGGATGTTAGCATCAAA
GAAGATTGTGATGGTTTTGCTCGCATGTTCTGTATTCCGTATATTGAAGAGAGTTTTTGGAACAAGTCAAGTGTAG
AA sequence
>Potri.001G155800.1 pacid=42789098 polypeptide=Potri.001G155800.1.p locus=Potri.001G155800 ID=Potri.001G155800.1.v4.1 annot-version=v4.1
MHPHSYTVDSLSKSQDLASSIFHSSTPPQISSVCASIDSFLHSHSPDQSRCFFSLAFPTLIRKLYGFDDSTSPPSKQSSAGGWLDIIHLANDPALTSRVF
NFLSPNSLLFQSIFAVDRQYLVNYAFPIERLPEWARFILSGEKGCQVLNNLCPLFKDKVKEDSIKGGGSLYYQVQLNLFEYFMFWFAYYPVCKGNSDNLK
SLATERPKKFKLENWTSSIPCFSHPKHGSERNVEGNDDLYMRLLYAYLRAFVPVCDLNSHQPYRGSLLHYGYGNDGSVLYRAEFFVDVLVNYWLVDSDFS
PLNVNVCKSWGLSFKLRLVPGETPPTPNLGEVVKLLVKYLNLSASAVKEGIEHFENPSWSRVSSEKSKDLAASINSPMHVVGSWNAWIQRPAYRFILRSF
LFCPMGTTIKNASQVFSVWVTYLEPWKIGLDNFAELDAIIDGSGNDVKKEGEKNVECGYSSSWQGYVLSNYLYYSSLVMHFIGFAHKFLHTDPEMIVQMV
LKVIKILTSSKELTDLIKNVDTAFHSRQAGSGKSMLSSLYGYIPLIREQLQDWEDGLCESDADGSFLHENWNKDLRLFGDGEDGGQQLLQLFILRAEAEL
QANSGDNLAGNLQCIDSLKLQVSCFFGGHTVKQISFTPEVKHVQSRDEIFKPRRVFNHASHNVKYKGDWMKRPISDDEVAWLAKFLVWLSSWLNENLGLY
QAERSNVDPKLSYVEPPSDAGNVCGSTEIMKMTLCAVCSWFLMSGAMVVRLMRKHGARVNLRMLASKKIVMVLLACSVFRILKRVFGTSQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47400 unknown protein Potri.001G155800
[exp]
0 1
AT2G34930 disease resistance family prot... Potri.015G024500
[exp]
4.35 0.8576
AT5G61960 AML1 MEI2-like protein 1 (.1.2) Potri.001G067300
[exp]
5.74 0.7866
AT3G16785 PLDZ1, PLDZETA1... PHOSPHOLIPASE D ZETA1, PHOSPHO... Potri.008G211100
[exp]
6.63 0.8271 PLDP1.1
AT5G08560 transducin family protein / WD... Potri.008G002700
[exp]
9.16 0.7903
AT3G42670 CLSY1, CLSY, CH... CLASSY 1, CLASSY1, chromatin r... Potri.010G183832
[exp]
14.69 0.7888
Potri.001G407500
[exp]
14.96 0.7889
AT1G19110 inter-alpha-trypsin inhibitor ... Potri.018G062500
[exp]
15.19 0.7644
AT3G17120 unknown protein Potri.008G102700
[exp]
15.96 0.7781
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.012G110400
[exp]
16.61 0.7635
AT1G04860 ATUBP2, UBP2 ubiquitin-specific protease 2 ... Potri.001G315600
[exp]
16.79 0.7400 UBP2.2

Potri.001G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.