Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPL15.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 330 / 1e-116 Ribosomal protein L23/L15e family protein (.1) AT4G17390 329 / 3e-116 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106800 [exp] 365 / 1e-130 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 365 / 1e-130 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.002G141500 [exp] 357 / 2e-127 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 357 / 2e-127 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004743 [exp] 347 / 3e-123 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10007805 [exp] 347 / 3e-123 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10009653 [exp] 345 / 2e-122 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10000165 [exp] 345 / 5e-122 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10028965 [exp] 345 / 7e-122 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1) Lus10009017 [exp] 337 / 2e-119 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF00827 [poplar] [flax] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Potri.001G156100.1 pacid=42790278 polypeptide=Potri.001G156100.1.p locus=Potri.001G156100 ID=Potri.001G156100.1.v4.1 annot-version=v4.1 ATGGGGGCTTACAAGTACGTGTCTGAGCTATGGAGGAAGAAGCAATCAGATGTGATGAGGTTCTTGCAAAGGGTTAGGTGCTGGGAGTACCGCCAGCATC CTTCTATTGTTCGTGTCACGCACCCCACTCGCCCTGACAAGGCTCGCCGCTTGGGCTATAAGGCCAAGCAGGGCTACGTGGTTTATCGTATCCGTGTCAG GCGGGGTGGTAGGAAGAGGCCCGTTCCCAAGGGTATTGTATATGGTAAGCCAACAAACCAGGGTGTTACTCAACTGAAGTTTCAACGAAGCAAGAGGTCT GTGGCAGAGGAGCGTGCTGGCCGGAAATTGGGGGGCCTCAGGGTTCTTAATTCATACTGGATTAACGAGGATTCTACTTACAAGTACTTTGAGGTAATCT TGGTTGATGTTGCCCACAATGCCATCCGCAATGACCCAAGAATCAACTGGCTCTGCAATCCTGTACACAAGCACAGGGAGCTTCGTGGCCTTACCTCCGC TGGGAAGAAATACAGGGGTCTACGTGGCAGGGGACACCTGCACCACAAAGCTCGACCTTCACGCAGGGCAAACTGGAAGAGAAACAACACACTCTCCCTT CGTCGTTACCGTTGA
AA sequence Show only first row Show all	>Potri.001G156100.1 pacid=42790278 polypeptide=Potri.001G156100.1.p locus=Potri.001G156100 ID=Potri.001G156100.1.v4.1 annot-version=v4.1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGRGHLHHKARPSRRANWKRNNTLSL RRYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.001G156100 [exp]	0	1	RPL15.3
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.005G194500 [exp]	2.00	0.9786	ARP1.1
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.015G094400 [exp]	2.44	0.9829	RPL17.2
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.008G156300 [exp]	3.87	0.9778	RS3.2
AT4G27090			Ribosomal protein L14 (.1)		Potri.008G168600 [exp]	4.12	0.9642
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.014G127300 [exp]	4.89	0.9767	RPL18.10
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.003G123101 [exp]	5.65	0.9714
AT2G37190			Ribosomal protein L11 family p...		Potri.006G077200 [exp]	5.74	0.9695	RPL12.4
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.001G304700 [exp]	7.07	0.9701	RPS16.3
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.008G150000 [exp]	7.34	0.9711
AT3G02560			Ribosomal protein S7e family p...		Potri.017G115400 [exp]	7.41	0.9743

Compare expression of checked genes

Potri.001G156100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.