Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17380 1223 / 0 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G18524 182 / 1e-47 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 164 / 1e-41 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G24495 155 / 1e-38 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 149 / 2e-36 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G20475 115 / 4e-26 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 88 / 2e-17 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 69 / 8e-12 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 67 / 3e-11 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060000 [exp] 182 / 2e-47 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.006G159200 [exp] 154 / 3e-38 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 154 / 3e-38 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.015G142900 [exp] 152 / 1e-37 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.014G121701 [exp] 145 / 2e-35 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.003G078601 [exp] 107 / 3e-27 AT4G17380 103 / 1e-26 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 117 / 9e-27 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.008G191051 [exp] 98 / 1e-22 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 80 / 4e-15 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007489 [exp] 1160 / 0 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10028966 [exp] 373 / 2e-121 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10042967 [exp] 189 / 8e-50 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 185 / 2e-48 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 160 / 8e-43 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10005743 [exp] 167 / 2e-42 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10017724 [exp] 149 / 1e-36 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10010010 [exp] 147 / 5e-36 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10000166 [exp] 128 / 2e-34 AT4G17380 182 / 9e-55 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10033095 [exp] 137 / 8e-33 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V CL0023 [poplar] [flax] PF05190 [poplar] [flax] MutS_IV MutS family domain IV CL0023 [poplar] [flax] PF05192 [poplar] [flax] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Potri.001G156200.3 pacid=42793607 polypeptide=Potri.001G156200.3.p locus=Potri.001G156200 ID=Potri.001G156200.3.v4.1 annot-version=v4.1 ATGGAAGACGATACAGGAGAGAAATCAAGCATTGTGATCGGCCTCATAGAGAACAGAGCCAAAGAGGTTGGAATGGCTGCTTTTGATTTAAGGTCAGCCT CACTGCATCTGTCTCAGTATATCGAAACTAGCAGCTCCTATCAGAATACAAAAACTCTGCTCCAATTTTATGATCCTGTGGTGGTCATTGTTCCTCCAAA CAAATTTGCACCTGATGGCATGCTCGGAGTTTCGGATCTGGTCGATCGGTTTTATGCTTCAGCCAAAAAGGTAGTAATGGCCCGTGGTTGCTTTGATGAC ACCAAGGGTGCTGTACTAATTAAAAATCTAGCAGCCACAGAGCCTTCAGCTCTTGGTTTGGATACTTACTACAAGCAATACTATCTCTGCTTGGCTGCTG CTGCAGCTACAATCAAGTGGATAGAAGCAGAGAAAGGGGTTATCGTCACCAACCACTCATTGTTGGTTACTTTTAATGGATCATTTGATCACATGAGTAT TGATGCCACCAGCGTCCAAAATTTAGAAATCATTGAGCCATTTCATTCTACCCTCTTGGGAACAACCAGCAAGAAAAGAAGTCTATTCCACATGCTCAAG ACAACGAAAACCACAGGAGGGACTAGACTTCTACGGGCCAATCTGTTGCAGCCTTTAAAAGATATTAAGACTATCAACACTCGGCTTGATTGCCTGGACG AACTAATGAGCAATGAACAGCTGTTTTTTGGACTCTCTCAGGCTTTGCGTAAGTTTCCGAAAGAGACTGATAGGATACTCTGTCACTTCTGCTTTAAACC TAAAAGAGTCACTAATGAGGTCTTGGGTGCTGATAATGCTCGAAGGAGCCAAGTGTTGATATCAAGCATTATTCTACTTAAAACTGCTTTAGATGCCTTG CCTTTACTCTCAAAGGCGCTTAAGAATGCAAAAAGTTTTCTTCTTGCAAATGTTTACAAGACTATATGTGAAAATGAGAAATATGTTTCCATTAGAAAGA GAGTGGGAGAGGTGATCGACGAAGACGTGCTTCATGCACGGGTTCCCTTTGTTGCCCGAACACAGCAGTGTTTTGCTGTCAAGGCTGGAATTGATGGACT TCTGGATATTGCACGGAGAACGTTTTGCGATACCAGTGAAGCAATACATAATCTTGCAAACAAGTATCGAGAAGAATTTAAGCTGCCAAATCTGAAACTT CCATTTAACAATAGACAAGGCTTTTACTTTAGTATTCCACAGAAAGACATCCGGGGAAAGCTTCCCAGCAAGTTCATTCAGGTCCTGAAACATGGGAACA ATATACATTGCTCAACTTTAGAACTTGCTTCATTGAACGTGAGAAATAAGTCTGCTGCTGCAGAGTGCTATATAAGAACAGAAGTTTGCCTTGAAGCCTT ATTAAATTCCATAAGGGAGGATGCCTCTGCACTAACTCTGCTTGCAGAGGTCTTATGCCTTCTAGATATGATCATTAATTCATTTGCTTACACAATCTCA ACGAAGCCTGTTGATAGATACACTAGACCAGAATTTACAAGTAATGGCCCATTGGCAATTGATGCTGGAAGACACCCTATCCTGGAAAGCATACACAATG ATTTTGTTCCCAACAATATTTTTCTATCAGAAGCATCAAACATGGTAATTGTCATGGGCCCAAACATGAGTGGGAAGAGCACTTATCTTCAACAAGTGTG TCTCATAGTTATTCTTGCTCAGATTGGTTGTTATGTTCCTGCTCGCTTCTCAACTATAAGGGTAGTTGATCGCATATTTACAAGGATGGGTTCGGTAGAT AATCTTGAATCAAACTCCAGTACGTTCATGACAGAGATGAAGGAGACTGCTTTTATCATGCAGAATGTCTCCCAAAGTAGTTTGATCTTTATGGATGAAC TTGGGAGAGCTACTTCTTCAGCTGATGGATTTGCGATTGCCTGGAGCTGCTGCGAACATCTGTTATCACTCAAAGCGTATTCCATATTCGCTACTCACAT GGAGAACCTATCAGAACTAGCAACCATCTATCCAAATGTCAGGATTGTTCACTTTCATGTTGACATAAAAAGCAACCGTTTGGATTTTAAGTTTCAACTC GAGGACGGACCAAGACATGTACCGCACTATGGCCTTCTATTAGCAGAAGTGGCTGGACTGCCAAGCTCAGTCATTGAAATGGCTAGAAGCATCACATCAA AGATTACAGAAAAGGCAGTACCATCAACTGCAGATGGTGTATCGTGTAGCTCAGCGATTGATATGCTTAAAGCACTCCAACCAAGACGAGGATTCTATCC GGCAAGCATTACAGAATCTCAAAGAGCAGTACATAAATGGAACACTTTAAAGCTTGTCGCAAGAAGTAACAACCCTCCAGTTCCAGGATGTCCAAACTGA
AA sequence Show only first row Show all	>Potri.001G156200.3 pacid=42793607 polypeptide=Potri.001G156200.3.p locus=Potri.001G156200 ID=Potri.001G156200.3.v4.1 annot-version=v4.1 MEDDTGEKSSIVIGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLQFYDPVVVIVPPNKFAPDGMLGVSDLVDRFYASAKKVVMARGCFDD TKGAVLIKNLAATEPSALGLDTYYKQYYLCLAAAAATIKWIEAEKGVIVTNHSLLVTFNGSFDHMSIDATSVQNLEIIEPFHSTLLGTTSKKRSLFHMLK TTKTTGGTRLLRANLLQPLKDIKTINTRLDCLDELMSNEQLFFGLSQALRKFPKETDRILCHFCFKPKRVTNEVLGADNARRSQVLISSIILLKTALDAL PLLSKALKNAKSFLLANVYKTICENEKYVSIRKRVGEVIDEDVLHARVPFVARTQQCFAVKAGIDGLLDIARRTFCDTSEAIHNLANKYREEFKLPNLKL PFNNRQGFYFSIPQKDIRGKLPSKFIQVLKHGNNIHCSTLELASLNVRNKSAAAECYIRTEVCLEALLNSIREDASALTLLAEVLCLLDMIINSFAYTIS TKPVDRYTRPEFTSNGPLAIDAGRHPILESIHNDFVPNNIFLSEASNMVIVMGPNMSGKSTYLQQVCLIVILAQIGCYVPARFSTIRVVDRIFTRMGSVD NLESNSSTFMTEMKETAFIMQNVSQSSLIFMDELGRATSSADGFAIAWSCCEHLLSLKAYSIFATHMENLSELATIYPNVRIVHFHVDIKSNRLDFKFQL EDGPRHVPHYGLLLAEVAGLPSSVIEMARSITSKITEKAVPSTADGVSCSSAIDMLKALQPRRGFYPASITESQRAVHKWNTLKLVARSNNPPVPGCPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	0	1
AT3G07080			EamA-like transporter family (...		Potri.014G189500 [exp]	4.79	0.8678
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	6.92	0.9233
AT1G14540			Peroxidase superfamily protein...		Potri.008G022264 [exp]	8.36	0.8981
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.017G012200 [exp]	9.59	0.8541
AT5G12260			unknown protein		Potri.012G121826 [exp]	13.63	0.9046
					Potri.004G188250 [exp]	14.07	0.8596
AT2G32730			26S proteasome regulatory comp...		Potri.004G183675 [exp]	15.09	0.8817
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	15.58	0.8897
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069950 [exp]	16.49	0.8593
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	17.17	0.9061

Compare expression of checked genes

Potri.001G156200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.