Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01410 432 / 2e-151 NHL domain-containing protein (.1) AT2G16760 84 / 5e-18 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G47370 75 / 9e-15 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G28660 48 / 2e-06 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111600 [exp] 570 / 0 AT2G01410 375 / 5e-129 NHL domain-containing protein (.1) Potri.014G120300 [exp] 109 / 6e-27 AT2G16760 393 / 1e-137 Calcium-dependent phosphotriesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031240 [exp] 522 / 0 AT2G01410 458 / 1e-161 NHL domain-containing protein (.1) Lus10031811 [exp] 513 / 0 AT2G01410 452 / 3e-159 NHL domain-containing protein (.1) Lus10015347 [exp] 90 / 6e-20 AT2G16760 374 / 6e-130 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10001126 [exp] 86 / 7e-18 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G156300.1 pacid=42789678 polypeptide=Potri.001G156300.1.p locus=Potri.001G156300 ID=Potri.001G156300.1.v4.1 annot-version=v4.1 ATGTCATCCTCGTCGTCTATCATAACTCTCCAGCTCCTACTCTTTTTCATTGTGGTTCCCATCTCTTCATTAGCAAAAAAGCCACACGTCATCCATTTCC GATCTCCCAACCTCTACCCTGAAGGCCTTGCCTACGACCCATCCGCCCAACACTTCATCGTCGGCTCTCTCCACCACCGCACTCTTCACTCCGTCTCCGA CGCCGGCGTTATCGAAACCATCATCTCCGACCCCTCCCTCCCTCCTAACACCACCATCCTCGGCCTCGCTGTTGATAAACTCAACAACCGCCTCCTAGCT GCCATCCACTCCGACCCTCCCCTCCCTCCATTCAACGCCCTCGCCGCTTACGACCTCCGCTCACGTCAGCAGCTCTTCCTCTCCCTCCTCCCCTCTACCC CCTCCGATGACAACCGCCGCCCCGTCGCCAACGCCGTCACCGTCGATTTCAAAGGCAACGCTTACGTCACCAACTCGCTAGGATACCCGGAGGGTAACTT CATATGGAAAGTCAACCCTGAAGGAGAAGCCTCGATTTTCTCGAGATCTCCGCTTTTCACGCAGTTCCCGGTGGACCGCGACGCACCGTATAGTTACTGC GGGCTGAATGGGATCGCTTACGTCAGCAAGGGGTATTTGCTGGTGGTGCAATCAAACACGGGCAAGTTGTTCAAAGTCGATGCTCGCGACGGGACGGCAC AGAATGTTTTGTTGAACGAGGATTTGCCGGTGGCCGATGGGATTGCGATAAGGGGAGACGGTGTCGTTTTGGTTGTGTCGCATGAGAAGCTGTGGTTTTT GAAGAGTGACGACAGTTGGGGAGAGGGAGTGGTTTATGACAAAACTGACCTTGATGTGGAGAGGTTTGCTACATCAGTTGTAGTGGGAAGAGAGGATAGG GCGTATGTGTTATATGGGAGTGTGTTGGAGGGTATAACGGGGAATGGAGGGAGGGAGTGGTTTGGTATAGAGGAGGTGAGGTCTGAGAAGGAGAATGAAG ATGAGAAAATGTGGGTGTATGTGTTAATAGGGTTAGGTTTGGCATATTTTTTAATTTGGAGGTTTCAAATGAAGCAGCTCTTCAAAAACATGGATAAGAA GACCAATTGA
AA sequence Show only first row Show all	>Potri.001G156300.1 pacid=42789678 polypeptide=Potri.001G156300.1.p locus=Potri.001G156300 ID=Potri.001G156300.1.v4.1 annot-version=v4.1 MSSSSSIITLQLLLFFIVVPISSLAKKPHVIHFRSPNLYPEGLAYDPSAQHFIVGSLHHRTLHSVSDAGVIETIISDPSLPPNTTILGLAVDKLNNRLLA AIHSDPPLPPFNALAAYDLRSRQQLFLSLLPSTPSDDNRRPVANAVTVDFKGNAYVTNSLGYPEGNFIWKVNPEGEASIFSRSPLFTQFPVDRDAPYSYC GLNGIAYVSKGYLLVVQSNTGKLFKVDARDGTAQNVLLNEDLPVADGIAIRGDGVVLVVSHEKLWFLKSDDSWGEGVVYDKTDLDVERFATSVVVGREDR AYVLYGSVLEGITGNGGREWFGIEEVRSEKENEDEKMWVYVLIGLGLAYFLIWRFQMKQLFKNMDKKTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01410			NHL domain-containing protein ...		Potri.001G156300 [exp]	0	1
					Potri.006G239650 [exp]	1.73	0.9354
AT3G42170			BED zinc finger ;hAT family di...		Potri.003G031700 [exp]	2.64	0.9113
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	3.46	0.9204
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	3.46	0.9201
AT1G55080		MED9	unknown protein		Potri.003G037200 [exp]	4.89	0.9146
AT3G22440			FRIGIDA-like protein (.1)		Potri.018G078701 [exp]	5.00	0.9165
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	8.83	0.9048
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.006G213600 [exp]	9.38	0.9104
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	10.81	0.9100
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Potri.004G209100 [exp]	11.22	0.8787

Compare expression of checked genes

Potri.001G156300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.