Plant FIBer expression Database

Potri.001G156600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47435 476 / 1e-170 formyltetrahydrofolate deformylase, putative (.1.2)
AT4G17360 471 / 2e-168 Formyl transferase (.1)
AT1G31220 75 / 3e-15 Formyl transferase (.1)
AT1G66520 53 / 1e-07 PDE194 pigment defective 194, formyltransferase, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G078000
[exp]
571 / 0 AT5G47435 484 / 7e-174 formyltetrahydrofolate deformylase, putative (.1.2)
Potri.012G107500
[exp]
70 / 2e-13 AT1G31220 337 / 1e-116 Formyl transferase (.1)
Potri.017G123300
[exp]
54 / 5e-08 AT1G66520 516 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028958
[exp]
500 / 7e-180 AT5G47435 498 / 3e-179 formyltetrahydrofolate deformylase, putative (.1.2)
Lus10007482
[exp]
98 / 7e-26 AT4G17360 99 / 7e-27 Formyl transferase (.1)
Lus10040974
[exp]
71 / 1e-13 AT1G31220 327 / 3e-112 Formyl transferase (.1)
Lus10013428
[exp]
66 / 7e-12 AT1G31220 326 / 4e-112 Formyl transferase (.1)
Lus10000450
[exp]
56 / 1e-08 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Lus10010978
[exp]
54 / 5e-08 AT1G66520 496 / 2e-177 pigment defective 194, formyltransferase, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00551 Formyl_trans_N Formyl transferase
Representative CDS sequence
>Potri.001G156600.5 pacid=42790326 polypeptide=Potri.001G156600.5.p locus=Potri.001G156600 ID=Potri.001G156600.5.v4.1 annot-version=v4.1
ATGAATCTGACACAAAGAAGAGTCCCTCAAGTATTTGAACTTGGAAGAAGCAGCAGCATCAGGTCCTTCAAGTCCATCGATTCCTCCTCTATTACCCACG
GCATCCACGTATTCCAATGCCCTGACGCTGTTGGTATTGTTGCGAAGCTATCAGATTGTATCGCTTCCAGAGGTGGAAACATTCTCGGTGCTGATGTTTT
CGTCCCTGAAAACAAGAATGTCTTCTATTCTAGAAGTGAGTTTATTTTTGACCCTGTTAAATGGCCACGGTTGCAAATGGATGAGGACTTTCTCAGGATT
TCAAAAATGTTTGATGCAACAAGGTCCGTTGTCCGGGTGCCTAAGCTAGACCCCAAATTCAAGATTGCTGTTCTTGCTTCAAAGCAGGAACACTGCCTGA
TTGATTTGTTACACTCATGGCAAGATGGAAGACTTCCGGTTGATATAACTCGTGTAATCAGTAATCATGATAGATTCCCAAACACGCATGTGGTTCGATT
TCTTGAAAGGAATAGTATTCCTTATCATTATTTGGGCACCAGCAAAGAGAATAACAGAGAAGACGAGATCTTGGATTTGGTTCAGAATACTGATTTTTTA
GTTCTTGCCAGGTATATGCAGTTATTATCTGGTAAGTTTTTGCAGAGATATAGGAAAGATATAATTAACATTCACCATGGCCTTTTGCCATCATTTAAGG
GTGGGCATCCATCAAAGCAGGCATTTGATGCGGGTGTGAAATTAATTGGTGCGACAAGTCACTTTGTTACCGAAGAGCTTGATGCAGGGCCTATCATTGA
GCAGATGGTTGAGAGGGTTTCCCATAGAGATAATATACAAAGTTTTGTGCAGAAATCAGAGAACCTTGAAAAACAATGCCTTGCAAAAGCTATAAAATCA
TACTGCGAATTGCGTGTTTTGCCTAATGAGGAAAACAGAACTGTTGTATTCTGA
AA sequence
>Potri.001G156600.5 pacid=42790326 polypeptide=Potri.001G156600.5.p locus=Potri.001G156600 ID=Potri.001G156600.5.v4.1 annot-version=v4.1
MNLTQRRVPQVFELGRSSSIRSFKSIDSSSITHGIHVFQCPDAVGIVAKLSDCIASRGGNILGADVFVPENKNVFYSRSEFIFDPVKWPRLQMDEDFLRI
SKMFDATRSVVRVPKLDPKFKIAVLASKQEHCLIDLLHSWQDGRLPVDITRVISNHDRFPNTHVVRFLERNSIPYHYLGTSKENNREDEILDLVQNTDFL
VLARYMQLLSGKFLQRYRKDIINIHHGLLPSFKGGHPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNIQSFVQKSENLEKQCLAKAIKS
YCELRVLPNEENRTVVF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47435 formyltetrahydrofolate deformy... Potri.001G156600
[exp]
0 1
AT3G23700 Nucleic acid-binding proteins ... Potri.014G148500
[exp]
3.60 0.9735
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Potri.010G254700
[exp]
7.74 0.9695 SHMT7,SHM1.3
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Potri.005G112900
[exp]
8.24 0.9657
AT4G00370 PHT4;4, ANTR2 anion transporter 2, Major fac... Potri.014G085700
[exp]
8.48 0.9633 ANTR2.2
AT1G08540 ATSIG1, SIG1, S... SIGMA FACTOR B, RNA POLYMERASE... Potri.013G070500
[exp]
11.22 0.9673 Pt-SIGB.2
AT4G04850 ATKEA3, KEA3 K+ efflux antiporter 3, K+ eff... Potri.009G080800
[exp]
12.84 0.9592
AT3G07670 Rubisco methyltransferase fami... Potri.014G169300
[exp]
13.41 0.9649
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Potri.008G002900
[exp]
15.65 0.9631 SHMT2,SHM1.2
AT4G18810 NAD(P)-binding Rossmann-fold s... Potri.004G061200
[exp]
17.49 0.9611
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.005G083200
[exp]
18.49 0.9516

Potri.001G156600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.