Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17350 348 / 7e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 320 / 6e-107 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 281 / 2e-91 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G22810 140 / 3e-37 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 125 / 6e-32 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 120 / 7e-31 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G63300 103 / 1e-24 FKD1 FORKED 1 (.1.2) AT4G32785 93 / 8e-23 unknown protein AT4G32780 51 / 6e-07 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077900 [exp] 517 / 0 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.010G082400 [exp] 151 / 2e-41 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.002G049200 [exp] 122 / 1e-30 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.008G157000 [exp] 121 / 2e-30 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.005G213800 [exp] 120 / 4e-30 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.018G042000 [exp] 118 / 1e-29 AT4G32785 159 / 1e-47 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004734 [exp] 322 / 2e-107 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10007797 [exp] 160 / 6e-46 AT4G16670 203 / 1e-62 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 120 / 6e-32 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014703 [exp] 114 / 3e-29 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10039370 [exp] 86 / 1e-18 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 86 / 6e-18 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 75 / 1e-14 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10021903 [exp] 65 / 1e-11 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004079 [exp] 47 / 9e-06 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10014704 [exp] 45 / 2e-05 AT3G63300 143 / 9e-41 FORKED 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [poplar] [flax] Auxin_canalis Auxin canalisation CL0266 [poplar] [flax] PH PF08458 [poplar] [flax] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Potri.001G156700.4 pacid=42792940 polypeptide=Potri.001G156700.4.p locus=Potri.001G156700 ID=Potri.001G156700.4.v4.1 annot-version=v4.1 ATGGAAAGTGGGCTTTATTCTTCTTTTAAAAGTAGTTCTTTGCTAGATTATTTAGAGGCGGACCAGGAGATGAAACCAGCATCTTCACTGCCAACAATCC CTCAACCAAAGACACCAAGAGAGCCTATGGAGTTCTTGTCTAGATCCTGGAGTCTCTCTGCTTCAGAAATTTCAAAAGCTCTAGCTCAGAAGCAGAAACA ATTTTTCACTGAAAAGAATTCCGATACATTTGCAGAGATAATTGTGGCACCACAAGCATCAGGGAAGGTGGTAAACTCTAATAGTCCAAGGACTGGATCA TTAGGAAAATGGTTCCACCACAAGGAATTCAGCAGTCGTGCAGTGAAGAAGAAAGACAAAGCACGCACCGAAAATGCTCATATGCATTCTGCTGTATCTA TAGCCGGACTAGCTGCAGCCTTGGCTGCGGTGACCGCTGCAGGAAATTCTAGTGGCTCCAGCTCCAAAATGAACATGGCTTTGGCCTCAGCTACAGAACT CCTCGCATCACATTGCATAGAATTAGCAGAATCAGCTGGAGCTGATCATGATCGTATGGCTTCTGTTGTGAGATCAGCAGTAGATATTCAAAGTCCAGGT GATCTAATGACCCTTACTGCAGCAGCAGCGACAGCTTTGAGAGGAGAAGCAACTTTAAAAGCAAGATTACCAAAAGAAGCAAGAAGGAATGCTGCTATAA GTCCTTATGATAGGGGGGTGGCAAACACTCCTTACTGGACTTCTTTAAATGGTCCATTAGAAGAACGGGGTCCTCCCTGTGTTGGTGAACTGTTGCAACA CACAAAGAAAGGGGCGTTGCGATGGAAACATGTCACCGTGTACATCAACAAGAAATCTCAGGTCCTAATTAAGATCAAAAGCAAACACGTTGGAGGAGCC TTGTCCAAGAAGCACAAAGGTGTTGTTTATGGAGTTTGTGATGAGACAACAGCATGGCGTTATATAAAAGAAAGAGTAAGTACTGAAGAAGTGTATTTCG GCATTAAAACAGCACAAGGTCTGCATGAGTTCGAGTGTAAAAGCAAAGTTCACAAGCAGAGGTGGGTTGATGATATAAAAAATCTCCTGCAACAAGTAAG TTATGTGGAAGTAACTGACCGCTCACTGAAATGCTTAAGCATAAACGATGGCGCATAG
AA sequence Show only first row Show all	>Potri.001G156700.4 pacid=42792940 polypeptide=Potri.001G156700.4.p locus=Potri.001G156700 ID=Potri.001G156700.4.v4.1 annot-version=v4.1 MESGLYSSFKSSSLLDYLEADQEMKPASSLPTIPQPKTPREPMEFLSRSWSLSASEISKALAQKQKQFFTEKNSDTFAEIIVAPQASGKVVNSNSPRTGS LGKWFHHKEFSSRAVKKKDKARTENAHMHSAVSIAGLAAALAAVTAAGNSSGSSSKMNMALASATELLASHCIELAESAGADHDRMASVVRSAVDIQSPG DLMTLTAAAATALRGEATLKARLPKEARRNAAISPYDRGVANTPYWTSLNGPLEERGPPCVGELLQHTKKGALRWKHVTVYINKKSQVLIKIKSKHVGGA LSKKHKGVVYGVCDETTAWRYIKERVSTEEVYFGIKTAQGLHEFECKSKVHKQRWVDDIKNLLQQVSYVEVTDRSLKCLSINDGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17350			Plant protein of unknown funct...		Potri.001G156700 [exp]	0	1
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	5.65	0.9302	Pt-ATNAC3.1
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.001G470000 [exp]	8.94	0.9169
AT1G75400			RING/U-box superfamily protein...		Potri.018G119600 [exp]	11.13	0.8847
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	16.85	0.9237	Pt-ATNAC3.2,NAC036
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G048200 [exp]	18.73	0.9093	ZOG1.17
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	19.59	0.8988
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.001G100200 [exp]	19.87	0.9164
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.010G150400 [exp]	20.49	0.9044	Pt-GAS1.2
AT2G38820			Protein of unknown function (D...		Potri.005G058200 [exp]	23.02	0.8078
AT1G02070			unknown protein		Potri.005G158400 [exp]	23.21	0.9139

Compare expression of checked genes

Potri.001G156700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.