Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47380 639 / 0 Protein of unknown function, DUF547 (.1) AT5G66600 206 / 1e-58 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 189 / 2e-51 Protein of unknown function, DUF547 (.1) AT3G13000 175 / 1e-47 Protein of unknown function, DUF547 (.1.2) AT1G76620 171 / 3e-46 Protein of unknown function, DUF547 (.1) AT3G18900 165 / 3e-44 unknown protein AT2G39690 157 / 3e-42 Protein of unknown function, DUF547 (.1.2) AT1G16750 157 / 2e-41 Protein of unknown function, DUF547 (.1) AT4G37080 157 / 7e-41 Protein of unknown function, DUF547 (.1.2.3) AT1G21060 154 / 2e-40 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130000 [exp] 228 / 1e-66 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 227 / 3e-66 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 209 / 3e-59 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 206 / 8e-59 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.004G150000 [exp] 206 / 2e-58 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G003900 [exp] 177 / 1e-47 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 158 / 3e-41 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G041100 [exp] 154 / 1e-39 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.014G034800 [exp] 149 / 4e-38 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007795 [exp] 613 / 0 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10004732 [exp] 327 / 2e-104 AT5G47380 372 / 5e-122 Protein of unknown function, DUF547 (.1) Lus10016786 [exp] 236 / 5e-69 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 232 / 9e-68 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10033328 [exp] 192 / 5e-53 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 181 / 7e-49 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10027653 [exp] 166 / 7e-44 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 159 / 8e-42 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10040507 [exp] 154 / 6e-41 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10037293 [exp] 157 / 8e-41 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547 PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.001G157200.5 pacid=42792395 polypeptide=Potri.001G157200.5.p locus=Potri.001G157200 ID=Potri.001G157200.5.v4.1 annot-version=v4.1 ATGAGGAATAGTGAAATGGATGGTTTGAGTGTAGATGGGGATGGAGAAAGAGCTAAAAATAGAGAGAATGGAGGCTCTTGGCCACCTCCGCGCATACAAC ACAGGCGCTCTAAAAGTGCATCTGAAAGGAACTCAGTCATTTCAGGGGGTCGAGTTTTGCATTCCTTAAAGAAAGACCAGAATGAAATTCATATGTTACC ACTTTCAACAAGGGCTCATAGAACACAAAGTCCTCTCCATGATTACCCCATTTGTAACGACAAAAATGCTTCATCTAACCACCGAGCCTCCTTGGAAAAA GATATTGAGCAGCTGCAATTACGATTGCAGCAGGAGAAATCTATTCGCATGGTGCTCGAGAAATCAATGGGCCGAGTTTCTAGTACTTTATCTCCTGGTC ATAGGCATTTTTCTACTCAGTGCCAGACAAAAGAGTTGATTGCAGAGATTGAGTTACTAGAAGAAGAGGTTGCAAACCGTGAGCAGCAAATGCTATCCAT CTACAGGAATGTTTTTGAAAGTTGTGTTAGCCGGGCACCATCTAAGCAAAACTCAGGCATGCCGTCTCCTGCCCATATAAAGCATGCATCCAGGAAACAC CCAAGTGTTATCTCAAGTGCCTTCTGCTCCTCAAAAAAGTTCCCTTTACGACCTTTGCAAGCTCTAGTTTCACCAGCTGAGTCAGGTAAAAGAACCCCTA AAGCCAGTGATGCTCCATCATCCCATGGAAAAAGTGACATTCATTCTGAGAAGAACTGTTACAACCTGGTTAAGGTTCATGAGAGAGTACCAGCCGCAGA GAAAACTTCCGTGCTGCAAACTCTGAAAGATCATCTTTATCAGTGCCCCAGCAAGTTGTCTGAAGAGATGGTCAGGTGTATGGCTGCAGTATATTACTGG CTCTGTAGTGCAGAATCTGTAGCTCCTGGAAAAAACAGATCACCTTTATTGTCAAGGTCTTCCACAAATGTTATACTTCCCGGACGTGGTATCGGAGAGG ATCGAGATTGGTCTTGCAAATCCATGGTAGAAATATCTTGGATATCAAATGATAAAAGCCAGTTCTCTCGTGCATCTTATGCCATCAACAATTATAGAGT TCTAGTGGAGCAACTGGAAAGGGTGACAGTGACTCGGATGGAAAACAGTGCGAAAACTGCATTTTGGATCAATGTGTATAATTCGCTTGTTATGCATGCA CATTTAGCATATGGAATTCCCCACAGCTCTCTTAGGAGGTTAGCCTTGTTTCATAAGGCTGCATACAACATTGGCGGCCATATCATTAGTGCAAATTCCA TAGAGCAGTCAATATTTTGCCTCCGTACACCCCGAGTTGGAAGGTGGTTTGAGACCATTCTTTCCACTGCCTTGCGGAAAAAATCTGGTGAAGAAAGGCA ACTTATTAGTTCCAAATATGGTCCATCAGATCCCCAAGCACTAGTCTGCTTTTCCCTCTGCACCGGTGCCTTTTCTGATCCCGCGCTAAAAGTCTACACA GCATCAAATGTTAAAGAAGAACTAGAAGTCGCTAAACGAGAGTTTCTTGAAACGAATGTGGTTGTGAGGAAGTCAAAAAAAGTGTTCTTACCCAAGGTGC TGGAAAGGTTTGCTAAGGAAGCTTCAATCAACTTGGATGATCTTCTCAAGTGGGTCGCTGAAAATGTTGACAATAAGCTTCATGATTCAATACAGAAATG CATCGATCATAAATCAAACAAAAAGGCATCTCAGGTTGTAGAGTGGTTACCTTACAGTTCAAGGTTCCGGTACGTGTTCTCAAAGGACTTAACAGAGAAG CCATGCTGGGTATGA
AA sequence Show only first row Show all	>Potri.001G157200.5 pacid=42792395 polypeptide=Potri.001G157200.5.p locus=Potri.001G157200 ID=Potri.001G157200.5.v4.1 annot-version=v4.1 MRNSEMDGLSVDGDGERAKNRENGGSWPPPRIQHRRSKSASERNSVISGGRVLHSLKKDQNEIHMLPLSTRAHRTQSPLHDYPICNDKNASSNHRASLEK DIEQLQLRLQQEKSIRMVLEKSMGRVSSTLSPGHRHFSTQCQTKELIAEIELLEEEVANREQQMLSIYRNVFESCVSRAPSKQNSGMPSPAHIKHASRKH PSVISSAFCSSKKFPLRPLQALVSPAESGKRTPKASDAPSSHGKSDIHSEKNCYNLVKVHERVPAAEKTSVLQTLKDHLYQCPSKLSEEMVRCMAAVYYW LCSAESVAPGKNRSPLLSRSSTNVILPGRGIGEDRDWSCKSMVEISWISNDKSQFSRASYAINNYRVLVEQLERVTVTRMENSAKTAFWINVYNSLVMHA HLAYGIPHSSLRRLALFHKAAYNIGGHIISANSIEQSIFCLRTPRVGRWFETILSTALRKKSGEERQLISSKYGPSDPQALVCFSLCTGAFSDPALKVYT ASNVKEELEVAKREFLETNVVVRKSKKVFLPKVLERFAKEASINLDDLLKWVAENVDNKLHDSIQKCIDHKSNKKASQVVEWLPYSSRFRYVFSKDLTEK PCWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47380			Protein of unknown function, D...		Potri.001G157200 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.003G112800 [exp]	2.00	0.8494
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002700 [exp]	2.82	0.8308
					Potri.007G000801 [exp]	8.48	0.7870
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.003G053000 [exp]	9.94	0.8529
AT5G66800			unknown protein		Potri.007G042600 [exp]	10.24	0.8420
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Potri.013G028100 [exp]	19.74	0.8188
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026500 [exp]	28.39	0.7561	Pt-AG12.2
AT5G04190		PKS4	phytochrome kinase substrate 4...		Potri.007G074056 [exp]	29.39	0.8136
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.014G106300 [exp]	29.46	0.8128
					Potri.013G004300 [exp]	33.16	0.7914

Compare expression of checked genes

Potri.001G157200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.