Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16650 773 / 0 O-fucosyltransferase family protein (.1) AT4G38390 546 / 0 RHS17 root hair specific 17 (.1) AT1G20550 545 / 0 O-fucosyltransferase family protein (.1) AT1G76270 540 / 0 O-fucosyltransferase family protein (.1) AT1G14970 328 / 9e-106 O-fucosyltransferase family protein (.1) AT2G01480 326 / 7e-105 O-fucosyltransferase family protein (.1) AT1G35510 309 / 2e-98 O-fucosyltransferase family protein (.1) AT1G38065 304 / 1e-97 O-fucosyltransferase family protein (.1) AT2G37980 307 / 6e-97 O-fucosyltransferase family protein (.1) AT1G38131 304 / 3e-96 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077500 [exp] 1025 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 567 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 564 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 558 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 554 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 330 / 2e-106 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 323 / 1e-103 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 308 / 1e-98 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 307 / 3e-97 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028957 [exp] 834 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 834 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 810 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 805 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 555 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 555 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 551 / 0 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 543 / 0 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 514 / 2e-178 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 332 / 5e-107 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G157400.1 pacid=42792072 polypeptide=Potri.001G157400.1.p locus=Potri.001G157400 ID=Potri.001G157400.1.v4.1 annot-version=v4.1 ATGCAGCTGCAACAGCAGCGGAGGAAGGTACCGCGGTCGCTAGTTTGTGGTTTCATGCTGTTTGGTTTGGGATTGATTTCTCTCTTCACTGGACACGTGG CATCTGATCTTGAGTGGTACTCTCAACGACTAGTCAAGCGCAGCTTCTTCTACTCTAGGCTGGAGGGGAGGCGACGCGAAGGCATTGATATTTGGAAATC GAAGTACTCGAATTTGTTCTATGGATGTAGCGAAAGAGGGCGTAATTTTCCTTCTGCCATACGTGAGCGGGCTTCTAATGGCTATTTGCTTATTGCTGCA AGTGGAGGGTTGAACCAACAAAGAACTGGAATAACAGATGCTGTGGTTGTTGCACGGATTCTTAATGCTACATTAGTTGTGCCCGAGTTAGATCATCGCT CTTATTGGAAGGATGATAGTGACTTTGTCAACATTTTTGACATTGATCGGTTCATTTCTTACCTTGCAAAAGATGTCACCATTGTGAAAAGGGTTCCTGA TAAAGTCATGCGGTCAATGGAAAAACCCCCATATACCATGCGTGTCCCAAGAAAATCCCCTCCTGAATATTATCTGGATCAAGTTCTGCCAATATTATTG AGGAGACGTGTTGTGCAGCTGACGAAGTTTGACTATAGGCTTGCAAGTAACCTTGACGAAGAGCTGCAAAAGTTGCGCTGCCGGGTTAATTATCATGCTT TAAGATTTACAAAACCCATACAAGAAATTGGCGAGAGACTTGTGACAAAAATGCGAAAGATGGCAAAACGTTATATTGCAGTTCACTTGAGGTTTGAACC TGATATGCTTGCATTTTCTGGGTGTTACTTTGGCGGGGGTGAAAAGGAGAGATTTGAGCTCGGGGAAATAAGAAAAAGATGGGAAACATTACCTGATTTA AGCCCCGATGGAGAGCGAGAGAGAGGAAAATGTCCACTCACTCCTCATGAAGTAGGATTAATGCTGCGTGCCCTTGGTTTTGCTAACAACACATACCTCT ATGTTGCATCTGGAGAAATATATGGTGGAGAAGAGACTCTAAGGCCCCTTAGAGAACTCTTCCCAAACTTCTATACAAAGGAGATGCTAGCAGTTGAAGA TCTAAAACCTTTTCTTCCATTTTCTTCCCGCCTGGCGGCCATCGACTACATTGCCTGTGATGAGAGTGATGTCTTTGTCACAAATAATAATGGAAACATG GCCAAGATTCTTGCTGGTCGAAGGAGGTACGCTGGGCATAAGAGGACCATCAGACCAAATGCAAAGAAGCTTAGTGCATTGTTCATGGCAAGGGATCAGA TGGGCTGGGATACATTTTCCAAAAAGGTGAAAGCAAGCCAGAGAGGATTTATGGGAGAGCCAGATGAGGTGAGGCCTGGACGAGGTGACTTTCATGAATA TCCATCTTGTATCTGTGAGAGGCCATTCACTGATGATGAAAACAGCAAGGGTGAAGATCGACCGTCAGCCAGGATTCCTGTGAACTTAAAGGAAAAAGTT CACTCCAAGTATGTTGGAGAGAACCAAGGTGACAAAAGCCTCCAGAGATTGAAGAAAAGCATGGGAGAAGAACCGATATCTTTAAGAGAGAATGAGGGTG ATGAAATTTTCCCTGACTGA
AA sequence Show only first row Show all	>Potri.001G157400.1 pacid=42792072 polypeptide=Potri.001G157400.1.p locus=Potri.001G157400 ID=Potri.001G157400.1.v4.1 annot-version=v4.1 MQLQQQRRKVPRSLVCGFMLFGLGLISLFTGHVASDLEWYSQRLVKRSFFYSRLEGRRREGIDIWKSKYSNLFYGCSERGRNFPSAIRERASNGYLLIAA SGGLNQQRTGITDAVVVARILNATLVVPELDHRSYWKDDSDFVNIFDIDRFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSPPEYYLDQVLPILL RRRVVQLTKFDYRLASNLDEELQKLRCRVNYHALRFTKPIQEIGERLVTKMRKMAKRYIAVHLRFEPDMLAFSGCYFGGGEKERFELGEIRKRWETLPDL SPDGERERGKCPLTPHEVGLMLRALGFANNTYLYVASGEIYGGEETLRPLRELFPNFYTKEMLAVEDLKPFLPFSSRLAAIDYIACDESDVFVTNNNGNM AKILAGRRRYAGHKRTIRPNAKKLSALFMARDQMGWDTFSKKVKASQRGFMGEPDEVRPGRGDFHEYPSCICERPFTDDENSKGEDRPSARIPVNLKEKV HSKYVGENQGDKSLQRLKKSMGEEPISLRENEGDEIFPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16650			O-fucosyltransferase family pr...		Potri.001G157400 [exp]	0	1
AT2G36670			Eukaryotic aspartyl protease f...		Potri.006G118800 [exp]	1.73	0.8628
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.015G129200 [exp]	5.47	0.8061	Pt-IRE.2
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.006G157200 [exp]	6.92	0.8094	FATB1.1
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.007G104000 [exp]	8.71	0.8399
AT2G42320			nucleolar protein gar2-related...		Potri.006G056800 [exp]	10.24	0.8334
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.003G212700 [exp]	11.83	0.8336	Pt-MOD1.2
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.010G158900 [exp]	13.78	0.7439
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.006G155800 [exp]	15.87	0.8071
AT5G57410			Afadin/alpha-actinin-binding p...		Potri.018G092000 [exp]	17.66	0.8164
AT2G35880			TPX2 (targeting protein for Xk...		Potri.016G066600 [exp]	19.05	0.8384

Compare expression of checked genes

Potri.001G157400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.