Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47470 442 / 6e-156 Nodulin MtN21 /EamA-like transporter family protein (.1) AT4G16620 316 / 2e-106 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 149 / 8e-42 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 147 / 9e-41 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 141 / 1e-38 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 141 / 1e-38 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 140 / 2e-38 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 137 / 3e-37 WAT1 Walls Are Thin 1 (.1.2) AT4G08290 137 / 6e-37 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 137 / 6e-37 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077300 [exp] 550 / 0 AT5G47470 431 / 1e-151 Nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 158 / 5e-45 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 155 / 3e-44 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.007G017800 [exp] 152 / 5e-43 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 150 / 3e-42 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G051500 [exp] 150 / 7e-42 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 149 / 1e-41 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 143 / 2e-39 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G176100 [exp] 141 / 1e-38 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004725 [exp] 480 / 3e-171 AT5G47470 430 / 3e-151 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10000330 [exp] 478 / 4e-170 AT5G47470 429 / 1e-150 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007475 [exp] 474 / 1e-168 AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028952 [exp] 471 / 2e-167 AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10001523 [exp] 144 / 1e-39 AT1G09380 446 / 6e-157 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 144 / 2e-39 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 143 / 3e-39 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 142 / 6e-39 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 141 / 1e-38 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 139 / 1e-37 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G157600.1 pacid=42790581 polypeptide=Potri.001G157600.1.p locus=Potri.001G157600 ID=Potri.001G157600.1.v4.1 annot-version=v4.1 ATGGTTTGGTACCGGAAGAAGCTAATTCTAGAGGATCTGGTGTTTATAGGAGGGTTGGTGTTGGTGCAATTTGTGTATGCAGGGAACTCAATTTTGTTGA GCTATCTCATGTCACTTGGCCTTGAACCTCTAACTATTGTTATCTTCTCTACTTTTGCCACCTTCCTTATAATCTCCCCCCTTGCCGTCTATTTTGAAAG GAGCAAATTGCCAAAGGAATTCAGTTTGAAGTTGCTGATTCGGCTGGTTTTAATTTCTTTTGGAGGGGTTACTTTGTTTCAGTCCTTATTCCTTAAGGGG ATAAAGCTAACTTCACCAGCAATGGCAACAGCCATGCCGAACCTTGCTCCAGGGATTATTTTCATTATTGCTTGGACATTGAGGTTAGAGAGGGTTAAGC TAAGTTGCATATACAGCAAAGTCAAGATTGGAGGCACATTATTATGTGTTGTAGGTGCCCTCATAATGAGTCTAATGAGCAGCACTGGAACAGCTAAAAA GTTCTCAAGTAATCCTCCCACAGCAGATATGTTCGACGTTCATAAGATTATCGGTTGCTTGTATCTCATGGCAGCAGTTTTTGTTCTATCAAGCAATGTT GTATTGCAGGCTACTACTTTGGTTGATTTTCCTGCTCCCATGTCCCTGTGTGCCATAACATCATTGATCGGTGTGGTTATAACTGCAACTGTGCAGTTGA TTCAAAACCACAAAGTAGACTTTGGCTGGCCCGTTGTGAGACTTGGGGACCTCATTTGCTATTCTGTACTGGGAGGTGCTATTGGTGGAGTATGTGTGAG CTTCAATGGATGGGCAATGAAGAAGAGGGGTCCAGTTCTTGTGTCCGTGTTTAGCCCCATTGCAACAGTTATCTCAGTTGTTTTTTCTGTTATTGCCTTT GGCGACAGGATTAACCTAGGAAGCCTCGCGGGTATGTTCCTCATGTTCAGTGGTCTATACTTCGTGCTATGGGCTAAAAGCAAAGAAGGTTTCCCTTCTG ATGATCACCTGGAAAGTGAGTTTGATCCACAGAAGCCTCTCTTGGCATAA
AA sequence Show only first row Show all	>Potri.001G157600.1 pacid=42790581 polypeptide=Potri.001G157600.1.p locus=Potri.001G157600 ID=Potri.001G157600.1.v4.1 annot-version=v4.1 MVWYRKKLILEDLVFIGGLVLVQFVYAGNSILLSYLMSLGLEPLTIVIFSTFATFLIISPLAVYFERSKLPKEFSLKLLIRLVLISFGGVTLFQSLFLKG IKLTSPAMATAMPNLAPGIIFIIAWTLRLERVKLSCIYSKVKIGGTLLCVVGALIMSLMSSTGTAKKFSSNPPTADMFDVHKIIGCLYLMAAVFVLSSNV VLQATTLVDFPAPMSLCAITSLIGVVITATVQLIQNHKVDFGWPVVRLGDLICYSVLGGAIGGVCVSFNGWAMKKRGPVLVSVFSPIATVISVVFSVIAF GDRINLGSLAGMFLMFSGLYFVLWAKSKEGFPSDDHLESEFDPQKPLLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.001G157600 [exp]	0	1
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	2.44	0.9141
AT5G47860			Protein of unknown function (D...		Potri.003G158400 [exp]	3.46	0.9223
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	4.89	0.9119
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033000 [exp]	8.24	0.8974
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056500 [exp]	8.48	0.8924
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056258 [exp]	8.66	0.8929
AT3G53990			Adenine nucleotide alpha hydro...		Potri.016G104600 [exp]	10.09	0.8712
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056316 [exp]	11.61	0.8875
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056000 [exp]	12.00	0.8739
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.008G116500 [exp]	13.78	0.8856

Compare expression of checked genes

Potri.001G157600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.