Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 159 / 2e-46 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 143 / 3e-40 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 115 / 5e-30 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G16610 79 / 4e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26610 69 / 8e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 62 / 6e-11 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G03510 59 / 1e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G61470 58 / 2e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G49900 58 / 4e-09 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT1G02040 56 / 1e-08 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077200 [exp] 484 / 2e-173 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 224 / 7e-71 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 224 / 9e-71 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 108 / 3e-27 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.002G143600 [exp] 71 / 1e-13 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.004G205300 [exp] 69 / 5e-13 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.009G166200 [exp] 68 / 8e-13 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 65 / 2e-11 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.014G017300 [exp] 62 / 7e-11 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028951 [exp] 187 / 1e-56 AT3G60580 117 / 1e-30 C2H2-like zinc finger protein (.1) Lus10008523 [exp] 169 / 4e-50 AT3G60580 107 / 3e-27 C2H2-like zinc finger protein (.1) Lus10004724 [exp] 168 / 1e-49 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1) Lus10007474 [exp] 164 / 5e-48 AT3G60580 99 / 7e-24 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 96 / 6e-22 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 94 / 3e-21 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 79 / 6e-17 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10015888 [exp] 75 / 1e-15 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 72 / 1e-13 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10004659 [exp] 72 / 1e-13 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G157700.1 pacid=42793242 polypeptide=Potri.001G157700.1.p locus=Potri.001G157700 ID=Potri.001G157700.1.v4.1 annot-version=v4.1 ATGGAGAGGCATAAATGCAGGCTCTGCGTTAGAACTTTTCCGAATGGCAGAGCTTTAGGTGGTCACATGAAGGCCCACTTGGCAGCAACTCGGCCGCAAC TCGGCCTTGATCGTAATGAGTCGTCCTCTTCCTCGTATTCTTCTTCTGCTGGTGAAGAAGAAGTGCAAGAAGAGCAAGAAATCATCAAGATCAAAGAAGC AGTTGAAGAGAAGTCTCTGGCTTATGGATTGAGAGAGAATCCCAAGAAAAGTTGCAGGCTTGCAGATCCTGAGTTCTCTTTTGCTGTTGATACTGGGTCT GTTGTTGTGCAAGATAGGGAGAGTGAGACCGAGTCAAGAAACCCAACTCGAAGACGATCCAAGAGGATCCGTAAATCATGTGGTTTTGGAGAGAGTCAGA AGCAGGATTTTGATGTCAAGAAAGTAGTAGACTTCAAGAATCCGAGTTGGGGCGAGTCATCATCACCAGCTGAGCCGGAACCGGTGAGTTCTGTTTCTGA TACCTCTCCTGAAGAAGATGTTGCTAGGTGCCTTATGATGTTGTCAAGAGACGTTTGGATGAGAAATGATGAAGAAGAAGTTCAAGAACAAGGCGGGAAA GATGGAGAAAAGTCGGTCGATATGTTGGAAGAAGCAGAGGAGATCAAAGTCAACAAGATTCGCGGGAAGTTTAGATGTGAGAAATGCATGAAACTGTTTC GATCTTCAAGAGCATTGAGCGGTCATAAGAGGATTTGCTCGTTAAATGCAACTGAAGCAAGAAATATTGCCGCTGCAGGTGATGCTAATGACAGAATTTT TGAGTGCCCCTATTGTCTCAGAGTGTTTGGGTCTGGGCAAGCACTTGGTGGACACAAAAGATCGCATCTTATAGGTTCTTCAACTAGTACTAATGCTGTT GCTGAAGTATCAACTAAACTCGAGAACAATATGATAGATCTTAACTTGCCTGCTCCAGTGGAAGATGATGAATTCAGTGTGGTGTCTGATGCATAA
AA sequence Show only first row Show all	>Potri.001G157700.1 pacid=42793242 polypeptide=Potri.001G157700.1.p locus=Potri.001G157700 ID=Potri.001G157700.1.v4.1 annot-version=v4.1 MERHKCRLCVRTFPNGRALGGHMKAHLAATRPQLGLDRNESSSSSYSSSAGEEEVQEEQEIIKIKEAVEEKSLAYGLRENPKKSCRLADPEFSFAVDTGS VVVQDRESETESRNPTRRRSKRIRKSCGFGESQKQDFDVKKVVDFKNPSWGESSSPAEPEPVSSVSDTSPEEDVARCLMMLSRDVWMRNDEEEVQEQGGK DGEKSVDMLEEAEEIKVNKIRGKFRCEKCMKLFRSSRALSGHKRICSLNATEARNIAAAGDANDRIFECPYCLRVFGSGQALGGHKRSHLIGSSTSTNAV AEVSTKLENNMIDLNLPAPVEDDEFSVVSDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	0	1
AT2G27060			Leucine-rich repeat protein ki...		Potri.004G197500 [exp]	1.73	0.9389
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	2.44	0.9347
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	3.74	0.9395
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	3.74	0.9430	Pt-FLA14.7
AT4G00440			Protein of unknown function (D...		Potri.002G160000 [exp]	5.83	0.9074
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	6.63	0.9282
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	8.48	0.9312
AT3G13275			unknown protein		Potri.001G469401 [exp]	8.66	0.9204
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	8.71	0.9385
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.011G132600 [exp]	8.77	0.9321

Compare expression of checked genes

Potri.001G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.