Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47490 1114 / 0 RGPR-related (.1) AT5G47480 1067 / 0 RGPR-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077100 [exp] 2035 / 0 AT5G47490 1033 / 0.0 RGPR-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028946 [exp] 1581 / 0 AT5G47490 1196 / 0.0 RGPR-related (.1) Lus10008520 [exp] 1454 / 0 AT5G47490 1143 / 0.0 RGPR-related (.1) Lus10004721 [exp] 1401 / 0 AT5G47490 1141 / 0.0 RGPR-related (.1) Lus10007471 [exp] 995 / 0 AT5G47490 778 / 0.0 RGPR-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12931 [poplar] [flax] Sec16_C Sec23-binding domain of Sec16 PF12932 [poplar] [flax] Sec16 Vesicle coat trafficking protein Sec16 mid-region
Representative CDS sequence Show only first row Show all	>Potri.001G157800.1 pacid=42791174 polypeptide=Potri.001G157800.1.p locus=Potri.001G157800 ID=Potri.001G157800.1.v4.1 annot-version=v4.1 ATGGCTACGAATCCTCCATTTAACGTGATGGAGGATCAGACGGATGAGGATTTCTTTGATAAGTTAGTTGATGATGATTTTGGGCCCCCTAATTTGGATT CGGGCCCTAAGTTCACAGAGGGAAGTGATTCTGATGAGGCGAAAGCCTTTGCCAATCTCAGTATTGAGGATACAAAAGGTGGATTCGAGGGGAAGGTTGA AAATGATGGTGCAGGATTGGATGGTGTGAAGGCGGAGGAGAGTAATGCGTTGGAGTCAGTGAATTCGTTGGGCTTGTCTGATGGGGTGATTGAGTCAAAT AATGATGGGATTGGATCGGAGGTTGTGCCTGAGACTACTGTTTGTCAAAGCAGTGGATCATTGAAATCAGGGGTTAAGGAAGTGGGGTGGGGTTCGTTTT ACGCAGATTCTGCGGACAATGGGAATCATGGGTTTGGTTCGTCCTCTGATTTTTTTAATGATTTTGGAGGCGGTTCAGAAGATTTTCCTGCAAATATAGT TCAAAGTGCTAGTAATGTAGAGAATAGGGGTGGTGGAGGTTTGGATAATTCGGTCAGTTATGAGCAATATCAAGATGGTTCACAAGTTTATGGAGGATCG GTGATGGAGAGTGTGAATGGACTGGACTTGAGTAGCAGTCAGTATTGGGAAAACATGTATCCTGGATGGAAGCAAGATGCAAACACTGGGCAGTGGTATC AAGTGGATGCTTTTGATGCTACAGCAAGCATGCAAGGGAGCGCTGATGGTGCTTTGGGGGTTGAATGTGTGGCTGCTTCGGCCTCAATCTCTGATGGGAA AAAAGAGGTTAATTATTTGCAGCAGACTTCACAGTCTGTGGTGGGAACTGTGGCTGAGACTAGTACAACCGAGAGTGTGTCTAGCTGGAATCAGGTTTCC CAAGGGAATAATAATGGTTACCCTGAACATATGGTTTTTGACCCACAATATCCTGGTTGGTATTATGATACAATGGTGGGAGAATGGCGCTCATTGGACA GTTACACACCATCTGCACAATCATCAACTGTTCAAACTAATGATCAGCAGAATCAAAATGGATTCGCATTTAGCAATCCTTATTCCCCAAATAGTAGTAG CATGAATGCTGAGTACGGACAAGCTGACAAGTATGGCTATCAGGGCTATAATAACCAAGGCCTACATGGCAGCGGGGGTGAGTCTTATGGTAGCTACAAT CAACAGGGTTTGAATATGTGGCAACCTCAGACTGCTGCCAAGACAGATACTATTTCGAATTTTGGTGGAAACCAGCAATTAGAGAATTTATATGGTTCAA ATGTGTCCATGAACAACCATGTGGATCAGCAGAATGCTTTTAATTATTCGGGGACAGTTCCATCATATGACAAAGCAAGTCAAGGTTATGCTGAGGCTAA CGGATTTGTTGGGTCACAAAGTTTTGTACACGGCGGGAACTTCAGTCAGAAGAGTAATCAGGAAACTGTAAAACAGAATGAACAAGCAATCTTTTCAAAC GATTACTTTAGCAGTCAGAAACAAGCAAGTGTTCCCCATCAATCATTTCAGAGCAACCAGCAGTTTTCTTATGCTCCCAACACTGGGAGATCATCTGCTG GGCGTCCTCCACATGCACTGGTTACTTTTGGATTTGGTGGGAAGCTCATAGTAATGAAAGATAGCAGTTCTCTTAGGAAAACATCCTTCAGCAGCCAGGA TCATGTAGGAGGCTCAATCTCAGTTATGAATTTGATGGAGATTATTTTAGGAAGTAGTGATAATGCTTCAAGTGTTGGAGGGGGCACTTGCAGTTATTTT CATGCTCTCTGCCAACAGTCCTTTCCAGGTCCTTTGGTGGGCGGAAATGTTGGAAATAAAGAATTGAATAAGTGGATTGATGAGAGAATTGCACACTGTG AATCACTTGGTGTAAATCAAAGAAAAGGCGAAGTATTGAGGTTGCTTCTCGCTTTACTGAAAATAGCTTGTCAGCATTATGGAAAACTTCGATCTCCATT TGGAACTGACAATTTATTGAAGGAGAGCGATGCTCCAGAATCAGCAGTTGCAAAACTCTTTGCATCTGCCAAGAAGAATAGCACACACTTCAGTGAGTAT GGTGCCCTTGACCACTGCTTGCAGAATATGCCCTTTGAAGGACAAATTAGGGCAACTGCTTCTGAGGTACAACATCTTCTGGTTTCTGGTAGAAAAAAAG AGGCTTTACAATGTGCACAAGAAGGCCAGCTGTGGGGACCAGCACTTGTTCTTGCGTCACAGCTTGGTGATCAGTACTATGTTGATACTGTCAAGCTAAT GGCACTTCGCCAGCTGGTAGCTGGTTCTCCTTTGCGAACATTATGCTTGCTAATAGCAGGGCAACCAGCTGAGGTATTTTCCACAGATTCTAATGTACAT GGTGGCTTTCCTGGTGATTTGAGTATCCCTCAACAACCTGTTCAGTTTGGGGCAAACAGAATGCTTGATGACTGGGAAGAGAATTTGGCTGTAATAACTG CAAACAGAACAAAAGATGATGAGCTCGTGCTCATGCATCTTGGAGATTGCCTATGGAAGGATAGAAGTGAGATTACTGCTGCACACATCTGCTATTTAAT AGCGGAAGCAAACTTTGAGTCATATTCAGACACTGCAAGGCTATGCCTAATTGGAGCAGATCACTGGAAGCATCCCCGAACATATGCTAATCCAGAGGCT ATTCAGAGAACTGAGTTGTATGAATACTCAAAGGTGCTTGGTAACTCCCAGTTTATCCTGCTACCGTTTCAGCCGTATAAGCTCATCTATGCATACATGC TGGCTGAAGTGGGCAAAGTCTCTGATTCACTTAAGTATTGTCAGGCTGTTTTAAAATCCCTAAAAACTGGTCGAGCTCCTGAAGTAGAAACATGGAAGCT TTTAGTATTATCCCTTGAGGAAAGGATTAGAGCCCATCAGCAGGGTGGATTCACCACAAATTTGGCTCCAGGAAAGATAGTTGGCAAGTTGCTCAACTTT TTTGATAGTACTGCACATCGTGTTGTTGGGGGCCTGCCACCACCCGCACCATCAGCATCACAAGGAAGTGTGCCAGATAGCCATCACCAACTGGTGGCTC CCAGAGTATCAGGTAGTCAGTCAACAATGACCATGTCATCGCTAATATCTTCTGCTTCAACAGAGCCCATAAGTGAATGGGCAGCTGATGGCAATAAAAT GACAATGCATAATAGAAGTGTTTCAGAGCCAGACTTTGGTAGAAGTCCAATACAGTATCAGGCTGATTCATCTACACAAGGAACTCCTTCCAGCACACAA AGTAAGGCATCAGGTTCAGTGGGGTCATCTCGGTTTGGTCGTTTTGGTTTTGGATCACAGCTTTTGCAGAAAACTGTAGGGCTAGTCTTAAGGCCTCGCT CGGATAAACAGGCTAAATTGGGTGAAAAGAACAAATTTTATTATGACGAAAAGCTCAAGAGATGGGTGGAGGAAGGTGTTGAACCCACAGCTGAAGCAGC AGCCTTGGCACCCCCTCCAACAACTCTAGGCTTCCAGAATGGAGGCTCGGACTACAACTTGAAATCCGCTTTGAAGAATGAAGTGTCTCCGACTGATGGG AACTCAACGTTTAAGAGTCCCACTTCAACAGACCATCCTTCAGGGATTCCGCCTATTCCAGCCAGTTCAAATCAATTCTCGGCTCGTGGGCGCATGGGTG TCAGGGCAAGGTATGTTGACACCTTTAACCAAGGTGGTGGAAAACCAGCAAATCTGTTCCAGTCCCCGTCTGTTCCATCTGTCAAACCTGCTGTTGCTTC AAATGCGAAGTTTTTTGTTCCCGCACCCGCACCCGCACCCGCACCATCACTAGAATATTCTATGGAAGCTATAGCAGAGAACATACAAGAAGACAGTGCA ACCACTGAAAAACCTTCTACATTCAATATGAAGGAGAATGATTATCCACAGCCTTCCACGTCTTCATCAGCAATGGCTATGCAAAGATTTCCAAGCATGG ATAACATTACGAGAAAGGGGGGTATGATAAATGGGAAAGACTTGGTTTCATCCAACTCACGACGAACAGCGTCATGGAGTGGGAGCTTCAGTGATTCATT TAGTCCTCCTAAGGTGATGGAATCCAAATCTCCAGGGGAGGCTTTGGGCATGACCCCTTCATCATTTATGCCTAGTGACCAATCCATGACGCGAATGCCA AGTAGCAGTAGTTTTGGAGATGAACTTCATGAGGTGGAACTTTAA
AA sequence Show only first row Show all	>Potri.001G157800.1 pacid=42791174 polypeptide=Potri.001G157800.1.p locus=Potri.001G157800 ID=Potri.001G157800.1.v4.1 annot-version=v4.1 MATNPPFNVMEDQTDEDFFDKLVDDDFGPPNLDSGPKFTEGSDSDEAKAFANLSIEDTKGGFEGKVENDGAGLDGVKAEESNALESVNSLGLSDGVIESN NDGIGSEVVPETTVCQSSGSLKSGVKEVGWGSFYADSADNGNHGFGSSSDFFNDFGGGSEDFPANIVQSASNVENRGGGGLDNSVSYEQYQDGSQVYGGS VMESVNGLDLSSSQYWENMYPGWKQDANTGQWYQVDAFDATASMQGSADGALGVECVAASASISDGKKEVNYLQQTSQSVVGTVAETSTTESVSSWNQVS QGNNNGYPEHMVFDPQYPGWYYDTMVGEWRSLDSYTPSAQSSTVQTNDQQNQNGFAFSNPYSPNSSSMNAEYGQADKYGYQGYNNQGLHGSGGESYGSYN QQGLNMWQPQTAAKTDTISNFGGNQQLENLYGSNVSMNNHVDQQNAFNYSGTVPSYDKASQGYAEANGFVGSQSFVHGGNFSQKSNQETVKQNEQAIFSN DYFSSQKQASVPHQSFQSNQQFSYAPNTGRSSAGRPPHALVTFGFGGKLIVMKDSSSLRKTSFSSQDHVGGSISVMNLMEIILGSSDNASSVGGGTCSYF HALCQQSFPGPLVGGNVGNKELNKWIDERIAHCESLGVNQRKGEVLRLLLALLKIACQHYGKLRSPFGTDNLLKESDAPESAVAKLFASAKKNSTHFSEY GALDHCLQNMPFEGQIRATASEVQHLLVSGRKKEALQCAQEGQLWGPALVLASQLGDQYYVDTVKLMALRQLVAGSPLRTLCLLIAGQPAEVFSTDSNVH GGFPGDLSIPQQPVQFGANRMLDDWEENLAVITANRTKDDELVLMHLGDCLWKDRSEITAAHICYLIAEANFESYSDTARLCLIGADHWKHPRTYANPEA IQRTELYEYSKVLGNSQFILLPFQPYKLIYAYMLAEVGKVSDSLKYCQAVLKSLKTGRAPEVETWKLLVLSLEERIRAHQQGGFTTNLAPGKIVGKLLNF FDSTAHRVVGGLPPPAPSASQGSVPDSHHQLVAPRVSGSQSTMTMSSLISSASTEPISEWAADGNKMTMHNRSVSEPDFGRSPIQYQADSSTQGTPSSTQ SKASGSVGSSRFGRFGFGSQLLQKTVGLVLRPRSDKQAKLGEKNKFYYDEKLKRWVEEGVEPTAEAAALAPPPTTLGFQNGGSDYNLKSALKNEVSPTDG NSTFKSPTSTDHPSGIPPIPASSNQFSARGRMGVRARYVDTFNQGGGKPANLFQSPSVPSVKPAVASNAKFFVPAPAPAPAPSLEYSMEAIAENIQEDSA TTEKPSTFNMKENDYPQPSTSSSAMAMQRFPSMDNITRKGGMINGKDLVSSNSRRTASWSGSFSDSFSPPKVMESKSPGEALGMTPSSFMPSDQSMTRMP SSSSFGDELHEVEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47490			RGPR-related (.1)		Potri.001G157800 [exp]	0	1
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	1.41	0.7962	LIG4.1
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.001G205500 [exp]	3.00	0.7887	KUP7.1
AT1G54920			unknown protein		Potri.005G034100 [exp]	3.46	0.7666
AT5G11700			unknown protein		Potri.018G058300 [exp]	4.00	0.7893
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	7.48	0.7675
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Potri.001G472700 [exp]	12.24	0.7117
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	18.11	0.7166
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	23.66	0.7242
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	24.37	0.6925
AT5G12300			Calcium-dependent lipid-bindin...		Potri.001G275800 [exp]	26.38	0.7111

Compare expression of checked genes

Potri.001G157800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.