Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17550 289 / 6e-99 AtPEX19-2, PEX19-2, PEROXIN19-2 ,PEROXIN 19-2 peroxin 19-2 (.1) AT3G03490 283 / 1e-96 AtPEX19-1, PEX19-1 peroxin 19-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077000 [exp] 419 / 3e-150 AT5G17550 319 / 8e-111 peroxin 19-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003813 [exp] 266 / 4e-90 AT3G03490 296 / 5e-102 peroxin 19-1 (.1) Lus10010463 [exp] 249 / 4e-83 AT3G03490 275 / 1e-93 peroxin 19-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04614 [poplar] [flax] Pex19 Pex19 protein family
Representative CDS sequence Show only first row Show all	>Potri.001G157900.1 pacid=42788104 polypeptide=Potri.001G157900.1.p locus=Potri.001G157900 ID=Potri.001G157900.1.v4.1 annot-version=v4.1 ATGGCGGACCAACACGACGACTTAGAACAACTCCTTGACAGTGCTGTTGATGATTTCCAGACTCTCAACCTTGCTCCTGCTTCTCAAAGAAGTGGAGATG GTAATGAAGAGAACAGAAAGCAGAAAGAGGAAGAGAAAGGGACCTGTCTTCCTTCATTGCCAACTGGTGTTCAAGGGTTGGGAATGGGATTGCCTGACTT GAAAAGCAAGAAAAAAGGGAAAAAAAAGGTTTCTAAAGAATCCCATGTTGAGGAGGCTCTTGATAAGCTTAGAGAACAGGCTAGGGAGGCTGTTAAAGGA TTGGAGTCTGTCACAGCCGCATCTAAGCCTGATGATTCTACCAAGGATGCATTTACGGATGATTGGGTTAAGCAGTTTGAGGAGCTTGCTGGTTCTCAGG ACATGGAATCTATTGTGGAGACCATGATGCAACAGCTTTTATCTAAGGAGATTCTTTACGAACCCATGAAAGAAATTGGAGAAAGATATCCAAAGTGGTT GGAAGAACACAAAGCCAGTCTGAACAAAGAAGACCATGAGCGTTACTCACATCAATATGAACTCATAAAAGATCTTAATGATGTCTACGACAGTGATCCT AGTAACTATAACAAGATATTTGATCTCATGCAGAAAATGCAAGAATGTGGCCAACCACCAAATGATATTGTCCAAGAGCTTGCTCCTGATATCGACTTTG CTAATCTCGGCCAAATATCTCCAGAGATGCTCGAGGCCCAGGGGAATTGTTGCATAATGTGA
AA sequence Show only first row Show all	>Potri.001G157900.1 pacid=42788104 polypeptide=Potri.001G157900.1.p locus=Potri.001G157900 ID=Potri.001G157900.1.v4.1 annot-version=v4.1 MADQHDDLEQLLDSAVDDFQTLNLAPASQRSGDGNEENRKQKEEEKGTCLPSLPTGVQGLGMGLPDLKSKKKGKKKVSKESHVEEALDKLREQAREAVKG LESVTAASKPDDSTKDAFTDDWVKQFEELAGSQDMESIVETMMQQLLSKEILYEPMKEIGERYPKWLEEHKASLNKEDHERYSHQYELIKDLNDVYDSDP SNYNKIFDLMQKMQECGQPPNDIVQELAPDIDFANLGQISPEMLEAQGNCCIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17550		AtPEX19-2, PEX1...	peroxin 19-2 (.1)		Potri.001G157900 [exp]	0	1
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.014G061400 [exp]	3.00	0.8376
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.014G123000 [exp]	19.44	0.7945
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Potri.002G026700 [exp]	20.83	0.7091
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.013G109500 [exp]	22.31	0.8226	SAT.2
AT5G22040			unknown protein		Potri.008G015500 [exp]	32.64	0.7654
AT3G58500		PP2A-4, EP7, PP...	protein phosphatase 2A-4 (.1)		Potri.006G196100 [exp]	36.27	0.7640
AT2G43540			unknown protein		Potri.007G134400 [exp]	38.60	0.8174
AT1G68220			Protein of unknown function (D...		Potri.008G124100 [exp]	44.87	0.7571
AT5G22040			unknown protein		Potri.008G001700 [exp]	51.20	0.7705
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.015G141100 [exp]	51.96	0.7341

Compare expression of checked genes

Potri.001G157900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.