Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16600 678 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35710 677 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) AT5G18480 117 / 6e-28 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G08990 78 / 4e-15 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 69 / 3e-12 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT4G33330 64 / 9e-11 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G77130 62 / 4e-10 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 61 / 9e-10 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G09350 49 / 4e-06 ATGOLS3 galactinol synthase 3 (.1) AT1G56600 45 / 5e-05 ATGOLS2 galactinol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076800 [exp] 852 / 0 AT4G16600 633 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.013G049100 [exp] 108 / 3e-25 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.005G187900 [exp] 68 / 8e-12 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.014G029900 [exp] 67 / 2e-11 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.005G033500 [exp] 65 / 6e-11 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.007G107200 [exp] 64 / 1e-10 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.013G022900 [exp] 63 / 2e-10 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G061600 [exp] 62 / 3e-10 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.014G116800 [exp] 54 / 8e-08 AT2G47180 568 / 0.0 galactinol synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004717 [exp] 711 / 0 AT4G16600 673 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10008518 [exp] 670 / 0 AT2G35710 632 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) Lus10027949 [exp] 113 / 7e-27 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 86 / 5e-19 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1) Lus10021731 [exp] 68 / 7e-12 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10028623 [exp] 68 / 8e-12 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 68 / 9e-12 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10033485 [exp] 67 / 1e-11 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 67 / 2e-11 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10042658 [exp] 66 / 4e-11 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G158000.1 pacid=42791335 polypeptide=Potri.001G158000.1.p locus=Potri.001G158000 ID=Potri.001G158000.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTCGAGAGCCTTGGTTAATGTTGAGGTTTTTGCTGGTTTTAGTTTTCGCTGTGTATAAAACGACAGCGTTTGGAGAGGTCATGAGGGCAC CCCAGATAGAGCAGCAGCAGCAAGAGGGGCAACGCCAGCGGCACAAAAACGCATATGCGACGATGATGTATATGGGGACGCCAAGAGACTATGATTTCTA CGTGGCTATACGTGTCATGCTCAGATCTCTTGCTAGATTACACGTGGATGCTGATCTCGTCGTCATTGCCTCTCACGATGTTCCTCTCCGTTGGGTTCAT ACCATGGAACAGGAAGATGGCGCAAGGGTAATGAGAGTGGAAAATGTGGACAATCCTTATAAGAACCAACCCAATTTCAATAGGAGATTTAAGTTAACAT TGAACAAACTCTACGTATGGAAATTGATTGAATATGAGAGGGTCGTCATGCTTGATGCTGACAATCTTTTCCTTAGAAGAGCTGATGAGCTTTTCCAATG TGGACAGTTCTGTGCAGTCTTCATCAACCCCTGCATCTTCCATACTGGCCTCTTTGTGCTGCAGCCATCCATGGAAGTGTTTAAGGACATGCTTCATCAG TTGGAAATTGGGAAAGAAAACCCAGATGGTGCAGACCAAGGTTTCATAAGCGGCTACTTCCCAGACTTGCTTGATATGCCGATGTTCCATCCACCTCTAA ATGGCACCACAGTCAACGGGTCCTATAGACTTCCTTTGGGCTACCAAATGGATGCCACTTATTATTATCTTAGACTCCGCTGGAACGTACCCTGTGGGCC TAACAGCGTGATTACTTTCCCTGGTGCATCATGGTTGAAACCATGGTATTGGTGGTCATGGCCTGTCTTGCCATTGGGCATTCAATGGCATGAACAACGT CGCCAAAGTCTCGGATACGGGACAGAAACGCCCATGGCACTCATTCAGTGCATAGTTTACCTAGGTATAATAGCAGTAACGCGTCTAGCACGGCCAAATA TCTCCAAGATTTGCTATCGGCGAACAGAAAAGAACATCTCCGTAATACAAGCCGGTCTTAAAATGCTAGCAATATGGTCAATTCTTGCAGCCTATTTACT CCCCTGCATCATCATTCCTTGCACAATTCATCCATTATTAGGCTGGGGATTGTACTTGCTCGGTTCTTTTGCACTTTGCTCCATGGCTATCAATGCGTTT ATGCTGCCGATGTTACCAGTTTTGACTCCATGCCTAGGGATATTCGGGGTCCTCTTGGTCATGGCATTTCCTCTCTACCCGAATGGTATTATAAGATGTT TATCTATTTTCGGTTACGCATTTTGTGCTGCACCTTTTCTCTGGGTATCACTGGTTAAGATCATGGCAAGCCTTCAAGCATCACTTGAAAGGGAAAACTT CTTCCCTAGATTGGGTGAATCTTCGCCACCTTCTGGATTCAACAAGTTATATTAG
AA sequence Show only first row Show all	>Potri.001G158000.1 pacid=42791335 polypeptide=Potri.001G158000.1.p locus=Potri.001G158000 ID=Potri.001G158000.1.v4.1 annot-version=v4.1 MASSREPWLMLRFLLVLVFAVYKTTAFGEVMRAPQIEQQQQEGQRQRHKNAYATMMYMGTPRDYDFYVAIRVMLRSLARLHVDADLVVIASHDVPLRWVH TMEQEDGARVMRVENVDNPYKNQPNFNRRFKLTLNKLYVWKLIEYERVVMLDADNLFLRRADELFQCGQFCAVFINPCIFHTGLFVLQPSMEVFKDMLHQ LEIGKENPDGADQGFISGYFPDLLDMPMFHPPLNGTTVNGSYRLPLGYQMDATYYYLRLRWNVPCGPNSVITFPGASWLKPWYWWSWPVLPLGIQWHEQR RQSLGYGTETPMALIQCIVYLGIIAVTRLARPNISKICYRRTEKNISVIQAGLKMLAIWSILAAYLLPCIIIPCTIHPLLGWGLYLLGSFALCSMAINAF MLPMLPVLTPCLGIFGVLLVMAFPLYPNGIIRCLSIFGYAFCAAPFLWVSLVKIMASLQASLERENFFPRLGESSPPSGFNKLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.001G158000 [exp]	0	1
AT3G57710			Protein kinase superfamily pro...		Potri.002G004900 [exp]	6.00	0.7252
AT1G49850			RING/U-box superfamily protein...		Potri.001G297000 [exp]	6.92	0.6495
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.016G032400 [exp]	17.34	0.6693
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	24.79	0.6835
AT1G73150		GTE3	global transcription factor gr...		Potri.001G285700 [exp]	25.03	0.6041	GTE906
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.002G037100 [exp]	27.92	0.6733
AT4G33420			Peroxidase superfamily protein...		Potri.018G136900 [exp]	31.68	0.6814
AT4G30630			unknown protein		Potri.006G183000 [exp]	32.52	0.6327
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Potri.019G124000 [exp]	32.66	0.5809
					Potri.003G105450 [exp]	43.95	0.6469

Compare expression of checked genes

Potri.001G158000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.