Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35720 712 / 0 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT3G47940 77 / 5e-15 DNAJ heat shock family protein (.1) AT1G59725 74 / 5e-14 DNAJ heat shock family protein (.1) AT3G08910 71 / 3e-13 DNAJ heat shock family protein (.1) AT1G80030 71 / 9e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G62600 70 / 1e-12 ATERDJ3B DNAJ heat shock family protein (.1) AT4G28480 69 / 1e-12 DNAJ heat shock family protein (.1.2) AT2G20560 69 / 2e-12 DNAJ heat shock family protein (.1) AT5G01390 67 / 2e-12 DNAJ heat shock family protein (.1.2.3.4) AT1G59980 68 / 6e-12 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076600 [exp] 936 / 0 AT2G35720 719 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G066100 [exp] 73 / 1e-13 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 71 / 4e-13 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 70 / 1e-12 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 69 / 1e-12 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 69 / 2e-12 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 69 / 2e-12 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.007G135700 [exp] 69 / 2e-12 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 68 / 3e-12 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008515 [exp] 682 / 0 AT2G35720 670 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004716 [exp] 679 / 0 AT2G35720 676 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013981 [exp] 74 / 5e-14 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10036668 [exp] 72 / 3e-13 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10030803 [exp] 71 / 3e-13 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10015402 [exp] 71 / 4e-13 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013280 [exp] 70 / 1e-12 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10017687 [exp] 69 / 2e-12 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 69 / 2e-12 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 69 / 2e-12 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11875 [poplar] [flax] DUF3395 Domain of unknown function (DUF3395)
Representative CDS sequence Show only first row Show all	>Potri.001G158200.1 pacid=42789392 polypeptide=Potri.001G158200.1.p locus=Potri.001G158200 ID=Potri.001G158200.1.v4.1 annot-version=v4.1 ATGGATGGAGAAGAGGCCGGACCACCCAAGAGAGAACTGTACGCACTTCTCCAAGTGTCACCGGAAGCCACCGATGAAGATATCAGAAAGGCTTATCGAC ATTGGGCTCAAGTTTATCATCCTGACAAGTACCAAGATTTTCATATGCAGCAAATAGCCACTGAGAACTTTCAACGAATATGCCAAGCATATGAAATATT ATCGGATGAGTATAAAAGGCAAATATATGACATATATGGCATGGAAGGTATAAATTCTGGTTTGGAGCTTGGTCCGAAGCTGGATAAAGTTGAAGAGTTG AAGGCCGAACTTGAAAGGTTGCGAAAGAGGAAGGAAGAAGAGAAGATGTTAGCTCATTTTCGACCTTCTGGCACAATACTCTCCCATTTGTCGTTGCCAC AGTTTCTGGATGGTGATGGCATTATGCGAGGAATGGCTATGTCTAGCGAAGTTCAATCTCAATTATCTAAGCGCACTGCTATTGCTATTGGTGGAAATTT GGAAGTTAATGAAAATTCTGGTGGTGGAGCTGCTTCTACAGTGCTCAGGCACCAGCTTTCTCCAGTTTCATCCATAGAATTCATAGCATCAGCTGGTTTA CGAGCACTTATTGGTGTGCAAACAACACGTAACCTATCTTTACACTCAACGGCTACAATTGCCATAGCAAAGTCTCTGAGGGATGGTTCAATTAATCTTT CCAATACCTGGACCCGCCAACTCTCTGAAACAGCAAATGGAAATATACAGCTTTTATTAGGTCCTGAGTCATCTATAGCAGTTGGATGGCAAAAGAAACA TGAAAAAATGTCTGCTTCTGGAGAGCTGAAGATTGGCACAAGCTCTTTTGCCGTGTCAGCTCATTATACTCATCGCTTTTCTTCAAAATCTCATGGTCGT ATTGCTGGCAGATTTGGAAGCACCAATTTGGAGGTTGAAGTTGGTGGGGGAAGGAAATTATCTAATTTCAGCACAGTTCGAATGCTGTATACAATAGGAA TTCAGGGAATCTTTTGGAAATTTGAATTGCACCGAGGAGGACAAAAGTTGATTATTCCTATGTTGCTTTCCAGGCATTTGAATCCAGTGTTTGCAACTGG AGCATTTGTAATCCCAACATCTCTTTACTTCTTACTCAAGAAATTCGTAGTCAAGCCTTATTACCTTCAAAGGGAAAAGCAGAAGACTTTAGAGAATAAA GAGAGAAATTCTGCCCAGGTTCAAGAGGCAAGAGCTGCAGCAGAAAAGGCACAACAATTATTAAAAATTGTGGCCAATAGGAAAATAAGTAAGCATTTAG AAACAAATGAACTTGTAATTACTAAAGCTGTGTATGGAAGCAGTAAAGCTTTGAAGAAAGCAGATGAATCAAGAGAAGTAAACAAAGAATCAGCTTCAGA AGTCTTTGATGTTACAATACCTCTTAATTTCTTAATTAACGATTCTGGCCAACTGAAGCTTCATGAGGGTGTAAGGAAGTCAGGAATCATGGGCTTTTGC GATCCTTGCCCTGGTGAACCTAAGCTGTTGCATGTGGAATTCACTTACGGTGGCAAAAGATTTGAGGTGGAGGTTGATGATTATGCAGCGTTGTTGATAC CCCAAGAATCCCATAGAGTCTGA
AA sequence Show only first row Show all	>Potri.001G158200.1 pacid=42789392 polypeptide=Potri.001G158200.1.p locus=Potri.001G158200 ID=Potri.001G158200.1.v4.1 annot-version=v4.1 MDGEEAGPPKRELYALLQVSPEATDEDIRKAYRHWAQVYHPDKYQDFHMQQIATENFQRICQAYEILSDEYKRQIYDIYGMEGINSGLELGPKLDKVEEL KAELERLRKRKEEEKMLAHFRPSGTILSHLSLPQFLDGDGIMRGMAMSSEVQSQLSKRTAIAIGGNLEVNENSGGGAASTVLRHQLSPVSSIEFIASAGL RALIGVQTTRNLSLHSTATIAIAKSLRDGSINLSNTWTRQLSETANGNIQLLLGPESSIAVGWQKKHEKMSASGELKIGTSSFAVSAHYTHRFSSKSHGR IAGRFGSTNLEVEVGGGRKLSNFSTVRMLYTIGIQGIFWKFELHRGGQKLIIPMLLSRHLNPVFATGAFVIPTSLYFLLKKFVVKPYYLQREKQKTLENK ERNSAQVQEARAAAEKAQQLLKIVANRKISKHLETNELVITKAVYGSSKALKKADESREVNKESASEVFDVTIPLNFLINDSGQLKLHEGVRKSGIMGFC DPCPGEPKLLHVEFTYGGKRFEVEVDDYAALLIPQESHRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.001G158200 [exp]	0	1
AT1G31660			unknown protein		Potri.001G394000 [exp]	1.41	0.8244
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.007G068800 [exp]	2.44	0.8475
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.001G465500 [exp]	4.00	0.8031	HEN902,HEN1.2
AT4G32910			unknown protein		Potri.018G044300 [exp]	4.47	0.7986
AT1G15420			unknown protein		Potri.001G173300 [exp]	6.24	0.8152
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195300 [exp]	6.48	0.7906
AT3G53940			Mitochondrial substrate carrie...		Potri.016G103300 [exp]	8.66	0.7481
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G133500 [exp]	10.81	0.7774
AT3G09890			Ankyrin repeat family protein ...		Potri.016G097900 [exp]	14.49	0.7849
AT4G25630		ATFIB2, FIB2	fibrillarin 2 (.1)		Potri.012G144800 [exp]	14.69	0.7835

Compare expression of checked genes

Potri.001G158200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.