Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) AT5G45120 194 / 4e-56 Eukaryotic aspartyl protease family protein (.1) AT3G52500 157 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT3G25700 127 / 8e-32 Eukaryotic aspartyl protease family protein (.1.2) AT3G18490 112 / 1e-26 Eukaryotic aspartyl protease family protein (.1) AT1G01300 112 / 2e-26 Eukaryotic aspartyl protease family protein (.1) AT2G03200 111 / 2e-26 Eukaryotic aspartyl protease family protein (.1) AT1G25510 109 / 1e-25 Eukaryotic aspartyl protease family protein (.1) AT1G09750 100 / 1e-22 Eukaryotic aspartyl protease family protein (.1) AT2G42980 100 / 3e-22 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076300 [exp] 773 / 0 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 196 / 8e-57 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 193 / 9e-56 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 179 / 1e-50 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 166 / 6e-46 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 150 / 5e-40 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 114 / 3e-27 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.002G171700 [exp] 112 / 3e-26 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 111 / 3e-26 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007466 [exp] 595 / 0 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 561 / 0 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 554 / 0 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 548 / 0 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 167 / 9e-46 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 164 / 5e-45 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 157 / 3e-42 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 121 / 1e-29 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 111 / 4e-26 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020279 [exp] 110 / 4e-26 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G158600.1 pacid=42789037 polypeptide=Potri.001G158600.1.p locus=Potri.001G158600 ID=Potri.001G158600.1.v4.1 annot-version=v4.1 ATGGCAACCTCTTACTCTTTGTTGCTCTGTTTCTCACTCTGTTTCTCCCACTTTTTTATCTCTACTTCACAAACTCTTTTTCTGCCTTTAACTCACTCCC TCTCCAAAACCCAATTCACCTCTACCCACCACCTCATCAAATCCACCTCCACCAGTTCCATCACCCGCTTCCGCCGCCACCACCACCAGAAGAACACCCA CAACCATCGTCAAGTCTCCCTCCCTCTCTCTCCCGGAAGTGACTACACTCTCTCCTTCACTCTCGACTCCCAACCCATCTTTCTTTATCTTGACACAGGA AGTGACCTTGTTTGGTTCCCATGCCAGCCTTTTGAATGCATTCTTTGTGAAGGCAAAGCTGAAAACACTTCTCTAGCTTCCACTCCACCACCTAAACTCT CCAAAACCGCCACCCCAGTTTCTTGCAAATCATCTGCATGTTCGGCTGCACACTCCAATCTCCCAAGCTCCGATCTTTGTGCTATTTCCAACTGCCCGTT AGAATCCATCGAAACATCTGATTGTCAAAAACATTCTTGCCCGCAATTCTATTATGCTTATGGCGATGGCAGCCTGATAGCTCGCCTATACCGCGACTCT ATTAGTCTACCGTTAAGCAACCCAACAAACTTGATAGTCAATAATTTCACATTTGGCTGTGCCCACACCGCGCTAGCCGAGCCTATTGGAGTTGCTGGGT TTGGCCGGGGAGTCCTTTCTTTGCCTGCCCAGCTTGCTACATTATCTCCCCAACTTGGGAACCAATTCTCTTATTGTTTGGTGTCTCATTCCTTTGATTC GGACAGACTTCGTCGACCAAGTCCGCTCATTTTAGGAAGGTATGATCATGATGAGAAAGAGAGAAGGGTAAACGGTGTTAATAAGCCTCGTTTTGTATAT ACTTCTATGCTCGATAATCTAGAGCACCCTTATTTTTATTGTGTTGGACTTGAGGGTATTTCTATTGGTAGAAAGAAAATCCCGGCTCCAGGGTTTTTGA GGAAGGTTGATGGAGAGGGGAGTGGTGGGTTGGTGGTGGATTCAGGGACTACTTTTACTATGTTGCCGGCGAGTTTGTATGGCTCGGTTGTGGCAGAGTT TGAGAACCGAGTTGGGCGAGTTAATGAGCGAGCTAGAGTTATTGAGGAAGATACTGGATTGAGTCCTTGTTATTATTTTGACAATAACGTGGTGAATGTG CCAAGTGTCGTGCTGCATTTTGTGGGGAATGGATCCAGTGTGGTGCTTCCTAGGAGGAACTATTTTTATGAATTTTTGGATGGTGGTGATGGGAAGGGGA AGAAAAGAAAGGTTGGGTGTTTGATGCTGATGAACGGTGGTGACGAGGCTGAGTTGAGTGGCGGGCCGGGGGCTACTTTGGGGAATTACCAGCAACAGGG GTTTGAAGTGGTTTATGATTTGGAGAATAAAAGGGTTGGGTTTGCAAGGAGGCAGTGTGCATCTTTATGGGAAACCTTGAACCGGGATTAA
AA sequence Show only first row Show all	>Potri.001G158600.1 pacid=42789037 polypeptide=Potri.001G158600.1.p locus=Potri.001G158600 ID=Potri.001G158600.1.v4.1 annot-version=v4.1 MATSYSLLLCFSLCFSHFFISTSQTLFLPLTHSLSKTQFTSTHHLIKSTSTSSITRFRRHHHQKNTHNHRQVSLPLSPGSDYTLSFTLDSQPIFLYLDTG SDLVWFPCQPFECILCEGKAENTSLASTPPPKLSKTATPVSCKSSACSAAHSNLPSSDLCAISNCPLESIETSDCQKHSCPQFYYAYGDGSLIARLYRDS ISLPLSNPTNLIVNNFTFGCAHTALAEPIGVAGFGRGVLSLPAQLATLSPQLGNQFSYCLVSHSFDSDRLRRPSPLILGRYDHDEKERRVNGVNKPRFVY TSMLDNLEHPYFYCVGLEGISIGRKKIPAPGFLRKVDGEGSGGLVVDSGTTFTMLPASLYGSVVAEFENRVGRVNERARVIEEDTGLSPCYYFDNNVVNV PSVVLHFVGNGSSVVLPRRNYFYEFLDGGDGKGKKRKVGCLMLMNGGDEAELSGGPGATLGNYQQQGFEVVYDLENKRVGFARRQCASLWETLNRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16563			Eukaryotic aspartyl protease f...		Potri.001G158600 [exp]	0	1
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	1.41	0.8471	RKF1.1
AT2G18420			Gibberellin-regulated family p...		Potri.012G076700 [exp]	1.41	0.8181
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	3.87	0.7919
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G061500 [exp]	4.00	0.7702
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	4.89	0.7911
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.013G152400 [exp]	6.00	0.7423	Pt-XTH9.2
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	8.77	0.7719
					Potri.008G045467 [exp]	10.24	0.7088
					Potri.012G129400 [exp]	13.74	0.7000
AT4G00770			unknown protein		Potri.014G077400 [exp]	16.30	0.7146

Compare expression of checked genes

Potri.001G158600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.