Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47510 421 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 354 / 4e-117 ATSFH12 SEC14-like 12 (.1) AT2G21540 350 / 2e-115 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 349 / 4e-115 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 350 / 9e-115 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 347 / 5e-114 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 342 / 4e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 338 / 7e-111 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 338 / 4e-110 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 330 / 1e-107 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076200 [exp] 696 / 0 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.007G020300 [exp] 346 / 1e-113 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.005G119700 [exp] 345 / 2e-113 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.002G032600 [exp] 341 / 4e-111 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 340 / 2e-110 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 337 / 2e-109 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 337 / 2e-109 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119400 [exp] 333 / 2e-108 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 328 / 3e-106 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028938 [exp] 518 / 0 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10007464 [exp] 493 / 4e-173 AT5G47510 421 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 345 / 2e-113 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 342 / 2e-111 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 336 / 1e-109 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042302 [exp] 332 / 4e-107 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 331 / 5e-107 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 330 / 6e-106 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040432 [exp] 327 / 2e-105 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 323 / 2e-104 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.001G158700.5 pacid=42789218 polypeptide=Potri.001G158700.5.p locus=Potri.001G158700 ID=Potri.001G158700.5.v4.1 annot-version=v4.1 ATGTTTAGACCAAAGGAGACTTACCGGGACATAATCATCTCGAGAGGCAGTGGAGAAGGTGAGGAAACTTCGGACTTGAAGAGTTCTCAATTTACAAAAG GAAGGGAAAAATCAATCCATCCACCCATTGAATCTCATTGGATTCTCCTTTCTCCAGAAGAAAATAAGCCATCTTCATTGCCAAAACCAGGCATCAAGTC AATGTTAAATTACCCTCTCAGGATTCGGGACTCCTTGAAGAAACTTGGAAAGAGCAAAAGCTTGCGAGTAGTCCTTGAAGGAGTCCATGATCCAAAAGAT GAAAAGCTTATTGATTCTTTCCGCGAACTGCTTTTTGTTGAAGGTCATTTAACGGGGAAGCACAATGATTATCATACTCTTTTACGGTTTCTCCGAATGA GAGACTTTGATTTTTCGAAAGCAAAGGACACATATGTGAATTATCTCAAGTGGCGTGAGGAATATGGGGTTGATGCAATTCCAAAGGAATTGAAGTTCGA AGAACATGCAGAAGTAAAGAAATGTTATCCTCATGGATATCATGGGGTTGATAGGTATGGAAGACCGATATATATTGAACGGATTGGAATGGTAGACATT AATTCCCTGGTACAGGCAACTACCATTGAAAGATTTGTCAAGTATCACGTGTCCGAACAGGAGAAGACATTAAATTTGAGGTTCCCTGCATGTTCAATTA CAGCAAAAAGGCATATAGCATCCACCACAAGTATCTTGGATGTGAAGGGAGTGGGCATGTCCAATTTCTCAAAGCCTGCGAGATGTCTCTTCATGGATAT TTTGAAAATCGATAGCAACTACTACCCAGAGACTCTGAATCGGCTCTTTATAGTCAATGCTGGAAATGGGTTCAGGATGCTGTGGAAAGCACTCAGGGCT TTTCTTGATGCACGCACATTAGCGAAGATTCATGTTTTGGGATGCAACTATCTAAGCAACCTGCTTGAAGTTATTGATCAAAGTAATTTGCCAAGTTTTC TTGGAGGGAACTGCACATGTTCTGATTATGGTGGTTGCCTGTTTAGTGATAAAGGACCCTGGCAGAACCCAGAAGTTGTAGAAATGCTTCAGTCGACTTC TATAACAGAGGAGATTTACAATACTGAATCAAACAGAGGTGTCGCTTCAGAGGAGGCTATGGGTACTGGCCAAAATGAAGATTCCGGTGATGCTTGCCTC ACACGAGAAGAACACAGAGAACACGAGGATACCAAAGTTGCTGGAAAAACCGAGGCGCAGAATATCCAGGCACTAGAACGTGCACTTGTGGACACCAACA AAGAAATCCAAGCACTGAAAACTGCTCTTGACAGCACGAAGGCGGTGAGCCTAGAAATGTTTGTGGTGTACTGCTGCCAATTTAGATCTCATCAAGTTTT GTTTATCTAA
AA sequence Show only first row Show all	>Potri.001G158700.5 pacid=42789218 polypeptide=Potri.001G158700.5.p locus=Potri.001G158700 ID=Potri.001G158700.5.v4.1 annot-version=v4.1 MFRPKETYRDIIISRGSGEGEETSDLKSSQFTKGREKSIHPPIESHWILLSPEENKPSSLPKPGIKSMLNYPLRIRDSLKKLGKSKSLRVVLEGVHDPKD EKLIDSFRELLFVEGHLTGKHNDYHTLLRFLRMRDFDFSKAKDTYVNYLKWREEYGVDAIPKELKFEEHAEVKKCYPHGYHGVDRYGRPIYIERIGMVDI NSLVQATTIERFVKYHVSEQEKTLNLRFPACSITAKRHIASTTSILDVKGVGMSNFSKPARCLFMDILKIDSNYYPETLNRLFIVNAGNGFRMLWKALRA FLDARTLAKIHVLGCNYLSNLLEVIDQSNLPSFLGGNCTCSDYGGCLFSDKGPWQNPEVVEMLQSTSITEEIYNTESNRGVASEEAMGTGQNEDSGDACL TREEHREHEDTKVAGKTEAQNIQALERALVDTNKEIQALKTALDSTKAVSLEMFVVYCCQFRSHQVLFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47510			Sec14p-like phosphatidylinosit...		Potri.001G158700 [exp]	0	1
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G155100 [exp]	5.19	0.7678	HAT1.3
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.005G109500 [exp]	5.74	0.8099
AT2G23210			UDP-Glycosyltransferase superf...		Potri.009G095550 [exp]	6.00	0.8193
					Potri.008G103700 [exp]	10.39	0.8069
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073441 [exp]	11.48	0.7564
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095200 [exp]	11.95	0.7539
					Potri.005G163950 [exp]	12.24	0.7625
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.001G027232 [exp]	15.32	0.7729
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	15.65	0.7694	Pt-NPH4.2
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Potri.009G127900 [exp]	19.39	0.7692

Compare expression of checked genes

Potri.001G158700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.