Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39720 58 / 6e-10 VQ motif-containing protein (.1) AT5G65170 54 / 2e-08 VQ motif-containing protein (.1) AT1G35830 53 / 2e-08 VQ motif-containing protein (.1) AT4G20000 47 / 2e-06 VQ motif-containing protein (.1) AT2G41010 45 / 8e-06 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1) AT3G22160 45 / 1e-05 VQ motif-containing protein (.1) AT3G56880 44 / 2e-05 VQ motif-containing protein (.1) AT4G15120 44 / 3e-05 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075800 [exp] 290 / 3e-100 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1) Potri.006G006300 [exp] 66 / 6e-13 AT4G39720 49 / 2e-06 VQ motif-containing protein (.1) Potri.005G076600 [exp] 56 / 5e-09 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1) Potri.005G166100 [exp] 55 / 7e-09 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1) Potri.002G094900 [exp] 54 / 3e-08 AT1G35830 89 / 1e-19 VQ motif-containing protein (.1) Potri.016G017900 [exp] 49 / 5e-07 AT4G15120 / VQ motif-containing protein (.1) Potri.007G091600 [exp] 45 / 2e-05 AT5G65170 72 / 2e-13 VQ motif-containing protein (.1) Potri.016G029600 [exp] 44 / 4e-05 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1) Potri.006G032300 [exp] 43 / 6e-05 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016814 [exp] 55 / 2e-09 AT4G39720 52 / 4e-08 VQ motif-containing protein (.1) Lus10024738 [exp] 54 / 2e-08 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1) Lus10006941 [exp] 54 / 2e-08 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1) Lus10012292 [exp] 40 / 0.0006 AT3G56880 125 / 1e-35 VQ motif-containing protein (.1) Lus10015982 [exp] 40 / 0.0007 AT3G56880 135 / 5e-39 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.001G158800.1 pacid=42791199 polypeptide=Potri.001G158800.1.p locus=Potri.001G158800 ID=Potri.001G158800.1.v4.1 annot-version=v4.1 ATGGCTAGTTCGTCGAGTGATTGGGTGCAACTCTATGAACAAGCCAATATTCATGGACAGGCAACACCTTCCTTTGGATTCTCAGATGCCACCAATGTTG CAACCAGTGGTGCATCGCATATCATAAATCCAAGCAGTTCAATTACATCAAGTGCTGGTGATCAGACGTTGACCCCTAAAGGTTGTGGGTCGAAGCCAAT CAAAAGGAGATCTAGAGCTTCTAAGAAGACACCAAGCACCCTGCTCACTGCCACCACCGCAAATTTCAGAGCCTTGGTGCAACAATTCACTGGCTGTCCT AGTATTCCCATTTCAATCGGGAACCAAAAGGGTCCAATCACCTTGAATTTTGGACTCGGGAGTGCACAAGATCATAGCTACGCGACTGCAGAAATGGCAC CTTTTGACAACATTTATTATCATGGGCAATCTCAGATGCAAGGACGACAGCAACCGAGGGAAAACGCACAGCAACTGCACCAGGACCAAGGATTACTTGA TCATCTTCCTAATAGTAATGCTTACTTCTCGTTGTCTAGTGACCTTGGACCTAATTTAGACAGGCCAGCTGATGATGGGCTTTTCAATATGGACGATATT GCTTTGCAAGAGCTTGCTAAGGAGTCTTTCTCCGATGAAAATATGAATAATATTGATTGCTTTTAG
AA sequence Show only first row Show all	>Potri.001G158800.1 pacid=42791199 polypeptide=Potri.001G158800.1.p locus=Potri.001G158800 ID=Potri.001G158800.1.v4.1 annot-version=v4.1 MASSSSDWVQLYEQANIHGQATPSFGFSDATNVATSGASHIINPSSSITSSAGDQTLTPKGCGSKPIKRRSRASKKTPSTLLTATTANFRALVQQFTGCP SIPISIGNQKGPITLNFGLGSAQDHSYATAEMAPFDNIYYHGQSQMQGRQQPRENAQQLHQDQGLLDHLPNSNAYFSLSSDLGPNLDRPADDGLFNMDDI ALQELAKESFSDENMNNIDCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39720			VQ motif-containing protein (....		Potri.001G158800 [exp]	0	1
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	2.23	0.9058	Pt-CYP94.7
AT1G67850			Protein of unknown function (D...		Potri.008G185600 [exp]	3.87	0.8691
AT1G78340		ATGSTU22	glutathione S-transferase TAU ...		Potri.019G130566 [exp]	3.87	0.8759
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.019G130433 [exp]	4.00	0.8693
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067300 [exp]	4.47	0.8832
AT5G25930			Protein kinase family protein ...		Potri.006G235450 [exp]	6.92	0.8599
AT5G16170			Core-2/I-branching beta-1,6-N-...		Potri.015G045500 [exp]	7.41	0.8512
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	10.58	0.8623
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	11.40	0.8487
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Potri.008G101400 [exp]	12.64	0.8414	MYB108.2

Compare expression of checked genes

Potri.001G158800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.