Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAN1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44790 1465 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 812 / 0 HMA5 heavy metal atpase 5 (.1) AT4G33520 343 / 2e-102 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 337 / 1e-100 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G30110 239 / 1e-65 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 216 / 2e-57 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 174 / 4e-46 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 132 / 3e-31 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT2G41560 99 / 1e-20 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 97 / 2e-20 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075700 [exp] 1748 / 0 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G125600 [exp] 829 / 0 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 827 / 0 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 782 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 765 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.018G047800 [exp] 348 / 3e-104 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.001G205400 [exp] 332 / 1e-98 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 330 / 2e-97 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.006G076900 [exp] 249 / 2e-68 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038364 [exp] 1434 / 0 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 1403 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10008309 [exp] 794 / 0 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 716 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10031840 [exp] 424 / 5e-133 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 312 / 3e-91 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10025467 [exp] 247 / 5e-68 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006955 [exp] 244 / 3e-67 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038070 [exp] 239 / 1e-65 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10011510 [exp] 150 / 1e-37 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00403 [poplar] [flax] HMA Heavy-metal-associated domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G158900.1 pacid=42787857 polypeptide=Potri.001G158900.1.p locus=Potri.001G158900 ID=Potri.001G158900.1.v4.1 annot-version=v4.1 ATGAGAGACCTACAGTTGACCCAGGCTGCTGGAACCCGGAAATCCCCTCCGGCCATGATTTCTGCCGGCGAAGAAGATGCCGATGACATGAAGGAGGATG TTAGGCTTCTTGATTCTTATGAAAGCCTTGGAGATAATGATAATTCGCATAGAATTGTGATCGAGGAAGATGGGTTTAAGAGAATTCAAGTGAGAGTTAC AGGGATGACTTGTGCAGCTTGTTCCAATTCTGTTGAATCAGCATTGAAGAGTGTTGATGGGGTTTTCAGAGCTTCTGTTGCTTTGCTTCAAAATAAAGCT GATGTTGTATTTGACCCTGCTTTGGTTAAGGATGACGATATCAAGAATGCAATTGAGGATGCAGGCTTTGAAGCAGAGATTCTATCTGAACCCATTAAAT TAAAAACAAAGCCAAATGGAACCCTTTTGGGGCAGTTCACAATTGGAGGTATGACCTGTGCTGCCTGTGTAAACTCTGTTGAAGGCATTTTGAGAGATCT TCCTGGTGTCAAAAGGGCTGTGGTGGCTTTAGCTACTTCTTTAGGGGAAGTTGAGTATGACCCTATTGTCATTAGCAAAGATGATATAGTGAATGCTATT GAAGATGCAGGCTTTGACGCGTCTCTTGTACAGAGTAGTCAACATGATAAAATTGTACTTGGAGTTGCTGGGATATTCAGTGAGGTGGATGTACAGCTTT TAGAGGGAATACTGAGCATGCTTAAAGGAGTAAGACAATTCCGTTACCACTGGATATCCAGTGAACTAGAAGTTCTCTTTGACCCTGAAGTTCTAGGTTC TAGATCCTTGGTTGATGGGGTTGAGGGAGGGAGCAATGGGAAATTTAAATTACATCCCATTAACCCTTACTCAAGAATGACTTCTAAAGATGTTGGAGAG ACCTCTGTTATGTTTCGACTTTTCCTTTCCAGTCTGTTTCTTAGTATTCCCATCTTCTTCATGCGAGTAATTTGCCCTTATGTACCACTGTTGTCTTCCT TGCTGCTCTGGCGCTGTGGACCCTTCTTAATGGGTGATTGGTTGAAGTGGGCATTGGTGAGTGTTGTTCAATTTGTAATTGGGAAGCGCTTCTACGTGGC AGCTGGTAGAGCCCTTCGAAATGGTTCAACCAATATGGATGTTTTAGTTGCATTGGGAACTTCAGCCTCATACTTCTACTCTGTTTGTGCACTACTATAT GGTGCAGTCACTGGCTTTTGGTCTCCAACATATTTTGAGACAAGTTCCATGCTGATTACATTTGTATTGTTGGGGAAGTATTTGGAGTGCCTTGCCAAGG GGAAAACGTCAGATGCTATCAAGAAGTTGGTAGAACTTGCTCCAGCAACAGCACTGCTGGTTGTCAAAGACAAAGGTGGAAGGTGCATTGGAGAAAGGGA AATAGATTCATTACTTATTCAGCCTAGTGACACATTAAAAGTTCTTCCTGGTACCAAAGTTCCTGCTGACGGTGTGGTTGTATGGGGTTCAAGTTACATT AATGAAAGCATGGTGACTGGTGAATCTGTGCCTGTTTTGAAAGAAGTTAGCTCATCAGTTATTGGAGGTACGATGAATTTACACGGCGCTCTTCACATAA AAGCTACTAAAGTAGGATCAGATGCTGTTTTGAGCCAGATAATTAGTTTGGTTGAGACAGCCCAGATGTCCAAAGCTCCAATTCAGAAATTTGCAGATTA TGTGGCAAGCATTTTTGTTCCTATAGTTGTTGGATTGTCTTTGGTGACATTCTTTAGCTGGTACATTAGTGGAATTTTGGGAGCTTACCCAGAAGAATGG CTTCCAGAAAATGGCACTTACTTTGTCTTTTCCCTTATGTTTTCAATCTCAGTTGTGGTAATTGCATGCCCATGTGCACTTGGCCTGGCAACACCAACCG CTGTCATGGTTGCTACTGGGGTTGGGGCTAACAATGGTGTGCTGATAAAAGGAGGAGAAGCTTTGGAAAGGGCCCAGAAGATTAAGTACGTGATATTTGA TAAAACAGGTACTCTAACCCAGGGAAAAGCCAGTGTTACTGATGCAAAAGTTTTCACTGGAATGGGCCGTGGAGAATTTCTCAGATGGGTGGCCTCTGCA GAGGCTAGCAGTGAACATCCACTGGCAAAAGCAATAGTGGAATATGCTCGTCATTTCCATTTCTTTGATGAACCTTCTGCAACCAGCCAAACCCCCAGCA GAGAGTCTACAATCTCTGGGTGGCTTCTTGATGTCTCAGACTTCTTGGCTCTTCCTGGAAGAGGTGTGAAGTGCTTTGTAGATGGAAAACAAGTTTTGGT TGGTAACCGGAAACTTATGATTGAGAGTGGAATTGCCATTCCAGACCAAGTAGAACATTTTGTAGTAGAGCTTGAAGAAAGTGCAAAGACAGGCGTCCTT GTTGCGTTTGATGACAAAATAATTGGTGTTTTGGGGATTGCAGATCCATTAAAGAGAGAAGCTGCTGTAGTGATAGAGGGCCTTCTGAAAATGGGTGTCA AACCAGTCATGGTGACAGGGGATAATTGGAGGACAGCACGTGCAGTTGCTAAGGAGGTGGGCATTCAAGATGTCAGGGCTGAAGTAATGCCAGCTGGCAA AGCTGATGTTATCCACTCATTTCAAAAGGATGGAAGCATCGTATCAATGGTGGGTGACGGCATCAATGACTCGCCTGCTCTAGCTGCTGCAGATATTGGT ATGGCAATTGGGGCAGGGACGGATATTGCCATAGAAGCTGCTGACTACGTGTTGATGAGGAATAACTTGGAGGATGTAATCACAGCCATTGATCTCTCAA GAAAAACCTTCACTCGCATTAGACTGAATTATATTTTTGCCATGGCTTACAATGTGATCGCAATACCTATTGCTGCCGGGGCTCTATTCCCTTCTCTAGG GATCATGTTGCCACCATGGGTAGCCGGTGCTTGCATGGCTCTCTCATCTGTAAGTGTTGTGTGCTCTTCTTTGCTTCTTCGAAGATACAGAAAACCCAGA CTTACCACCATCTTGGAAATAACCGCGGAGTAG
AA sequence Show only first row Show all	>Potri.001G158900.1 pacid=42787857 polypeptide=Potri.001G158900.1.p locus=Potri.001G158900 ID=Potri.001G158900.1.v4.1 annot-version=v4.1 MRDLQLTQAAGTRKSPPAMISAGEEDADDMKEDVRLLDSYESLGDNDNSHRIVIEEDGFKRIQVRVTGMTCAACSNSVESALKSVDGVFRASVALLQNKA DVVFDPALVKDDDIKNAIEDAGFEAEILSEPIKLKTKPNGTLLGQFTIGGMTCAACVNSVEGILRDLPGVKRAVVALATSLGEVEYDPIVISKDDIVNAI EDAGFDASLVQSSQHDKIVLGVAGIFSEVDVQLLEGILSMLKGVRQFRYHWISSELEVLFDPEVLGSRSLVDGVEGGSNGKFKLHPINPYSRMTSKDVGE TSVMFRLFLSSLFLSIPIFFMRVICPYVPLLSSLLLWRCGPFLMGDWLKWALVSVVQFVIGKRFYVAAGRALRNGSTNMDVLVALGTSASYFYSVCALLY GAVTGFWSPTYFETSSMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGRCIGEREIDSLLIQPSDTLKVLPGTKVPADGVVVWGSSYI NESMVTGESVPVLKEVSSSVIGGTMNLHGALHIKATKVGSDAVLSQIISLVETAQMSKAPIQKFADYVASIFVPIVVGLSLVTFFSWYISGILGAYPEEW LPENGTYFVFSLMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGEALERAQKIKYVIFDKTGTLTQGKASVTDAKVFTGMGRGEFLRWVASA EASSEHPLAKAIVEYARHFHFFDEPSATSQTPSRESTISGWLLDVSDFLALPGRGVKCFVDGKQVLVGNRKLMIESGIAIPDQVEHFVVELEESAKTGVL VAFDDKIIGVLGIADPLKREAAVVIEGLLKMGVKPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVIHSFQKDGSIVSMVGDGINDSPALAAADIG MAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFTRIRLNYIFAMAYNVIAIPIAAGALFPSLGIMLPPWVAGACMALSSVSVVCSSLLLRRYRKPR LTTILEITAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	0	1	Pt-RAN1.4
AT1G79330		ATMC5, AMC6, AT...	metacaspase 2b, metacaspase 5 ...		Potri.008G081100 [exp]	5.47	0.7879
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.014G104800 [exp]	14.17	0.7343	NAC065
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	14.96	0.7879	SAP.1
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.005G110600 [exp]	19.33	0.7602
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	19.36	0.8022
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	21.44	0.8011
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	31.17	0.6902
AT5G18520			Lung seven transmembrane recep...		Potri.006G214900 [exp]	38.61	0.7336
AT2G24400			SAUR-like auxin-responsive pro...		Potri.006G278100 [exp]	40.47	0.7603
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	46.74	0.7635	COMT1,Pt-OMT1.2

Compare expression of checked genes

Potri.001G158900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.