Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 418 / 6e-148 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 411 / 8e-146 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 118 / 3e-30 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075000 [exp] 521 / 0 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.016G017500 [exp] 445 / 1e-158 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 439 / 3e-156 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.018G132700 [exp] 118 / 2e-30 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 117 / 5e-30 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 115 / 4e-29 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 112 / 4e-28 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036229 [exp] 437 / 5e-156 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 435 / 2e-155 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10003808 [exp] 433 / 9e-154 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 432 / 2e-153 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 408 / 8e-144 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 280 / 3e-95 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10039039 [exp] 236 / 2e-77 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10027604 [exp] 122 / 2e-31 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 120 / 6e-31 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 110 / 1e-27 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01467 [poplar] [flax] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Potri.001G159400.1 pacid=42791318 polypeptide=Potri.001G159400.1.p locus=Potri.001G159400 ID=Potri.001G159400.1.v4.1 annot-version=v4.1 ATGGAGGAAGAGAAGGCAAAGAAGAGCTCGAGGACAGTAGAGGCAGCAGCAGAGGAGGAGAAGGAGAGGCCAGTTCGAGTATATGCAGACGGCATCTACG ATCTCTTCCACTTTGGCCATGCCCGTTCTCTCGAGCAAGCCAAGAAACTGTTTCCAAATACGTATTTGGTGGTTGGATGCTGCAATGATGAGATGACTCA CAGATATAAGGGTAAAACTGTGATGACTGATCAAGAACGCTACGAGTCTCTTCGCCATTGCAGGTGGGTTGACGAAGTTATCCCTGATGCGCCATGGGTT ATCACACAAGAGTTTCTCGACAAGCATAGGATCGACTATGTGGCTCATGACTCTCTTCCTTATGCTGATGCAAGTGGAGCCGGAAAGGATGTCTATGAAT TTGTCAAGTCTGTTGGGAGATTTAAGGAAACAAAACGGACTGATGGGATCTCCACTTCTGATATTATAATGAGGATTGTTAAAGATTATAATGAGTATGT GATGCGTAATTTGGCACGTGGATATACAAGAAAAGATTTGGGTGTCAGTTATGTGAAGGAGAAGCGGCTGAGAGTTAACATGGGGCTTAAAAAGTTCCGT GAGAAGGTGAAGAAACAGCAAGAGATAGTTGGGGAAAAGATACAAGTAGTTGCTAAAACTGCCCGTGTGCATCGGAATGAGTGGGTGGAGAATGCTGATA GATTGGTTGCTGGATTTCTTGAAATGTTCGAAGAACGTTGTCATAAAATGGGAACAGCTATCAGAGAGCGAATTCAAGAGAAACTGACAAAGCGGCAGTT GATAGGTCTTATGTATGATAGATACGATGGTGATAGTGATGAGTACTACTACGATGATGACACTGGTGAAGAATACAGTGACTAG
AA sequence Show only first row Show all	>Potri.001G159400.1 pacid=42791318 polypeptide=Potri.001G159400.1.p locus=Potri.001G159400 ID=Potri.001G159400.1.v4.1 annot-version=v4.1 MEEEKAKKSSRTVEAAAEEEKERPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLVVGCCNDEMTHRYKGKTVMTDQERYESLRHCRWVDEVIPDAPWV ITQEFLDKHRIDYVAHDSLPYADASGAGKDVYEFVKSVGRFKETKRTDGISTSDIIMRIVKDYNEYVMRNLARGYTRKDLGVSYVKEKRLRVNMGLKKFR EKVKKQQEIVGEKIQVVAKTARVHRNEWVENADRLVAGFLEMFEERCHKMGTAIRERIQEKLTKRQLIGLMYDRYDGDSDEYYYDDDTGEEYSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	0	1
AT3G16560			Protein phosphatase 2C family ...		Potri.003G159600 [exp]	2.00	0.8239
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.015G074900 [exp]	3.87	0.8054
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Potri.003G031100 [exp]	4.47	0.7917
AT5G19930			Protein of unknown function DU...		Potri.018G073000 [exp]	4.58	0.7984
AT1G67910			unknown protein		Potri.008G186200 [exp]	5.65	0.7747
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Potri.006G036400 [exp]	6.48	0.8011
AT5G24750			UDP-Glycosyltransferase superf...		Potri.003G021100 [exp]	7.21	0.7769
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	8.94	0.7952
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	14.00	0.7444	NTR1.4
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	14.83	0.7834

Compare expression of checked genes

Potri.001G159400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.