Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-QRT3.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20050 604 / 0 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) AT4G20040 409 / 3e-139 Pectin lyase-like superfamily protein (.1) AT1G17150 47 / 3e-05 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074600 [exp] 829 / 0 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G075400 [exp] 426 / 2e-146 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 407 / 3e-138 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 389 / 6e-131 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036231 [exp] 562 / 0 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 449 / 2e-155 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038369 [exp] 361 / 6e-120 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 324 / 2e-105 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 313 / 3e-101 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 311 / 1e-100 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 309 / 1e-99 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 286 / 9e-92 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 43 / 5e-05 ND 48 / 2e-07 Lus10008700 [exp] 43 / 6e-05 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.001G159900.1 pacid=42793553 polypeptide=Potri.001G159900.1.p locus=Potri.001G159900 ID=Potri.001G159900.1.v4.1 annot-version=v4.1 ATGGAGCCTGCAATGCAAGGAAAAATGTTCACGATTCTTATGGGGTTGGCTAGTTTGTTCATTGTTCATGTCAATGGAGAGACTTCTCTTCCGCTTGATC ATCAAAAACTCATCAGTGATGGTCGTTATCATGATCAAATGCAAAAAATGCAAGCTTTCAAGCACTCTTTGTTAACTCGTCGACAATTGGCCACTCCCCC AATCTCTTCCTCTCCAGCTCCGGCACCACAGGCTACGCTCCAGCCAACTGGGTCTCGTCCACGTGTATACCAGGTGACATCATACGGTGCAGATCCAACA GGGAAAGTAGACAGCACGGAGGCACTCTTAAAAGCTATAGCAGACGCGTTTAATGGTCCCAGTGAAGGGTTCTTGATGAAGGGAATCACTAATCTCGGTG GCGCACACATTAATCTTCAAGGTGGAAATTACTTGATCAGCAAACCTCTGCGACTGCCGGCTGCTGGAGCTGGGAACCTAATGATTAGCGGAGGGACATT AACAGCATCGGATGATTTCCCAACAGACGGATACCTTATTGATCTATCAGCCTCATCATCGTCTTCATCGTCCTATAACTACGAGTATATAACTATTAAA GACCTCATGCTGGACTGCAAGTTTAGGGGAGGAGGCATTTCAGTTATAAACTCACTTCGGACTAGCATAGATAATTGTTACATCACACATTTCAACACTG AAGGAATTTCAGTCCAAAATGGCCACGAGACCTATATCCGCAACTCCTTCCTTGGACAGCATATTACTGCAGGTGGCGATCCGGGCGAAAGGAAATTTTC AGGCACTGCAATTAACCTAATGGGAAACGATAATGCTGTTACAGATGTGGTTATATTTTCAGCTGCTATAGGAGTAATGGTTTCCGGTCAGGCTAACACA CTTTCTGGTGTACATTGTTATAATAAGGCAACAGGTTTTGGTGGCACTGGAATTTATTTGAAGCTGCCAAGTCTGACACAGACCCGGATTGTGAATTGTT ACTTGGATTACACTGGCATTGTTGCTGAAGACCCAGTGCAGCTTACAATCTCTAGCTGTTTTTTCCTCGGTGATGCATACATCCTCCTCAAATCAATTAA TGGTTTGGCAAAGGGAATCAACATTGTTGATAACATGTTTGCTGGATCTGACAAGGGGATTGAGATTGTTCAGTTGGACCAATCAAAAGGCCCTTTTAAG AAGATTGATCAAGTTGTGGTGGATAGGAATAATGTAGAGGGGATGAATCTGAAGGCAACGGCTGCAAGAGGTTCTGCGCAAGGGAATGGCACTTCATGGA CTGTAGACTTCAGTCCAGTTCTATTGTTTCCTAACCTTATCAATCATGTACAATACTCATTAAGTTCAAGTGGCACGAAGTTTCCCAGCCATGCTTTAAG GAATGTTTCTCAAAACCGTGTTGTGATTGAGTCCGATATCGCGGTGGCGGCAAGAGTTTTCGTCACGGTGGAGCAGGGCAGCACAAGTTGA
AA sequence Show only first row Show all	>Potri.001G159900.1 pacid=42793553 polypeptide=Potri.001G159900.1.p locus=Potri.001G159900 ID=Potri.001G159900.1.v4.1 annot-version=v4.1 MEPAMQGKMFTILMGLASLFIVHVNGETSLPLDHQKLISDGRYHDQMQKMQAFKHSLLTRRQLATPPISSSPAPAPQATLQPTGSRPRVYQVTSYGADPT GKVDSTEALLKAIADAFNGPSEGFLMKGITNLGGAHINLQGGNYLISKPLRLPAAGAGNLMISGGTLTASDDFPTDGYLIDLSASSSSSSSYNYEYITIK DLMLDCKFRGGGISVINSLRTSIDNCYITHFNTEGISVQNGHETYIRNSFLGQHITAGGDPGERKFSGTAINLMGNDNAVTDVVIFSAAIGVMVSGQANT LSGVHCYNKATGFGGTGIYLKLPSLTQTRIVNCYLDYTGIVAEDPVQLTISSCFFLGDAYILLKSINGLAKGINIVDNMFAGSDKGIEIVQLDQSKGPFK KIDQVVVDRNNVEGMNLKATAARGSAQGNGTSWTVDFSPVLLFPNLINHVQYSLSSSGTKFPSHALRNVSQNRVVIESDIAVAARVFVTVEQGSTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.001G159900 [exp]	0	1	Pt-QRT3.4
AT1G70985			hydroxyproline-rich glycoprote...		Potri.010G113100 [exp]	18.00	0.7983
AT1G05100		MAPKKK18	mitogen-activated protein kina...		Potri.014G155000 [exp]	25.98	0.7361	MAPKKK15.2
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018766 [exp]	44.69	0.7455
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	87.68	0.6891
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	158.00	0.7046	Pt-RAN1.4
AT5G09800			ARM repeat superfamily protein...		Potri.007G110600 [exp]	200.39	0.6889	PHOR1-2

Compare expression of checked genes

Potri.001G159900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.