Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20070 729 / 0 ATAAH allantoate amidohydrolase (.1) AT5G43600 167 / 2e-46 ATAAH-2, UAH ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076100 [exp] 154 / 2e-41 AT5G43600 680 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038372 [exp] 759 / 0 AT4G20070 706 / 0.0 allantoate amidohydrolase (.1) Lus10036233 [exp] 747 / 0 AT4G20070 697 / 0.0 allantoate amidohydrolase (.1) Lus10021221 [exp] 137 / 2e-35 AT5G43600 607 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) Lus10022211 [exp] 132 / 5e-34 AT5G43600 603 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G160100.1 pacid=42792801 polypeptide=Potri.001G160100.1.p locus=Potri.001G160100 ID=Potri.001G160100.1.v4.1 annot-version=v4.1 ATGATAACTCCCCTGCTGTTCCTGCAACTCTGTGTCTTATCAATAGTGTTACCGACAACTAGTTCTGCTTTCATGCTCTCTGGTAGAGAGGATGATTTAT TCGCTGAAATCTTGAGAGATGAGGCTGTGTCAAGACTCAATCAACTTGGAAAGGTGAGTGATGCTGATGGCTATCTTGAGAGGACATTCATGAGCCCAGC TTCTGTGAGGGCAGCGAATCTTATTCGCGCTTGGATGGAGGACGCTGGTTTGACGACATGGGTGGATTATATGGGCAATGTACATGGTCGAGTTGAGGGA TTGAATGCAAGTGCTGAGGCTCTATTGATTGGTTCTCATTTGGATACTGTTGTTGATGCTGGGATATTTGATGGGTCACTAGGTATAATCTCAGCAATAT CAGCTTTAAAGGTTTTGAAAAGCAATGGAACTTTGACAAATCTTATACGGCCAGTCGAGGTCATTGCATTTAGTGATGAGGAGGGAGTGAGATTTCAATC TACTTTCCTAGGCAGTGCTGCTGTAGCCGGTATATTACCAGTTTCAGCATTGCAGATATCTGATAAGAGTGGTGTAAATGTCCAAGATGCTCTGAAGGAG AATTCCATTGCAATCACAGAAGAAAGTCTATTTCAGCTCAAGTATGATCCACAATCTGTTTGGGGTTACATTGAGGTTCACATCGAACAAGGACCGGTAC TAGAATGGGTTGGTTTTCCCCTCGGTGTGGTTAAAGGCATTGCTGGGCAAACACGGCTAAAGGTCACAGTGCGAGGTTCACAAGGACATGCTGGAACAGT CCCAATGTCCTTGCGTCAGGACCCCATGGCTGCTTCTGCTGAATTAATCATGTTGTTGGAAAGTTTATGCAAAAATCCTAAGGATTTTTTATCTTATGAT GGTCATTGCAATGATTCCACAGTGGAATCTCTTTCTAATTCCCTTGTCTGTACTGTTGGTGAGATATCCACCTGGCCAAGTGCAAGCAATGTCATTCCAG GCCAGGTTACCTTTACTGTGGATTTACGTGCAATGGATAACATGGGACGTGAAGCTGTTCTTTATGAACTATCTAATAGAATGTATGAAATATGTGAGAG GCGTTCTGTTTCTTGCATCATTGAACGTAAGCATGATGCAAATGCAGTGATCTGTGATTCAGAACTAACTTCAGAGCTGAAGTTTGCAGCCAATGCTGCT CTCAAGAGATTAACCGGCGAAATTCAAGATGAAGTTCCCGTGCTAATGAGTGGAGCAGGACACGACGCAATGGCTATGTCTCATCTAACAAAGGTTGGAA TGCTATTTGTCCGCTGTCGTGGAGGCGTAAGCCACTCTCCTGCAGAGCATGTGCTGGATGATGATGTTTGGGCTGCTGGTCTGTCAATCTTAGCATTTCT CGAGACGCACATGTAA
AA sequence Show only first row Show all	>Potri.001G160100.1 pacid=42792801 polypeptide=Potri.001G160100.1.p locus=Potri.001G160100 ID=Potri.001G160100.1.v4.1 annot-version=v4.1 MITPLLFLQLCVLSIVLPTTSSAFMLSGREDDLFAEILRDEAVSRLNQLGKVSDADGYLERTFMSPASVRAANLIRAWMEDAGLTTWVDYMGNVHGRVEG LNASAEALLIGSHLDTVVDAGIFDGSLGIISAISALKVLKSNGTLTNLIRPVEVIAFSDEEGVRFQSTFLGSAAVAGILPVSALQISDKSGVNVQDALKE NSIAITEESLFQLKYDPQSVWGYIEVHIEQGPVLEWVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSLRQDPMAASAELIMLLESLCKNPKDFLSYD GHCNDSTVESLSNSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDNMGREAVLYELSNRMYEICERRSVSCIIERKHDANAVICDSELTSELKFAANAA LKRLTGEIQDEVPVLMSGAGHDAMAMSHLTKVGMLFVRCRGGVSHSPAEHVLDDDVWAAGLSILAFLETHM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Potri.001G160100 [exp]	0	1
AT1G77810			Galactosyltransferase family p...		Potri.005G171400 [exp]	2.82	0.6929
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	3.74	0.7126
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036500 [exp]	4.89	0.6846
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	14.86	0.6300
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.018G030500 [exp]	19.07	0.6801
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	24.73	0.6461	Pt-CEO1.1
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.010G247500 [exp]	25.45	0.6135	EIN3C,CMEIL2.1
AT4G30510		ATATG18B	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G101200 [exp]	25.69	0.6363
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	28.98	0.6456
AT4G32190			Myosin heavy chain-related pro...		Potri.006G255800 [exp]	33.94	0.6433

Compare expression of checked genes

Potri.001G160100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.